Table I.
GO enrichment analysis of green module and brown modules (only biological processes).
| Term | Description | Count | % | FDR |
|---|---|---|---|---|
| Green module | ||||
| GO:0030574 | Collagen catabolic process | 25 | 3.205128 | 1.50×10−14 |
| GO:0006954 | Inflammatory response | 55 | 7.051282 | 2.00×10−13 |
| GO:0007155 | Cell adhesion | 58 | 7.435897 | 1.81×10−11 |
| GO:0030198 | Extracellular matrix organization | 35 | 4.487179 | 4.26×10−10 |
| GO:0030593 | Neutrophil chemotaxis | 20 | 2.564103 | 8.23×10−9 |
| GO:0007267 | Cell-cell signaling | 38 | 4.871795 | 9.10×10−9 |
| GO:0030199 | Collagen fibril organization | 16 | 2.051282 | 1.31×10−9 |
| GO:0042060 | Wound healing | 21 | 2.692308 | 3.96×10−8 |
| GO:0070098 | Chemokine-mediated signaling pathway | 19 | 2.435897 | 3.11×10−7 |
| GO:0006935 | Chemotaxis | 24 | 3.076923 | 5.95×10−7 |
| GO:0060326 | Cell chemotaxis | 17 | 2.179487 | 5.16×10−6 |
| GO:0002548 | Monocyte chemotaxis | 13 | 1.666667 | 8.20×10−5 |
| GO:0008284 | Positive regulation of cell proliferation | 45 | 5.769231 | 1.24×10−4 |
| GO:0006955 | Immune response | 42 | 5.384615 | 1.51×10−4 |
| GO:0001501 | Skeletal system development | 22 | 2.820513 | 1.56×10−4 |
| GO:0071346 | Cellular response to interferon-γ | 14 | 1.794872 | 4.19×10−4 |
| GO:0071347 | Cellular response to interleukin-1 | 15 | 1.923077 | 9.83×10−4 |
| GO:0050900 | Leukocyte migration | 19 | 2.435897 | 2.31×10−3 |
| GO:0022617 | Extracellular matrix disassembly | 15 | 1.923077 | 2.34×10−3 |
| GO:0010628 | Positive regulation of gene expression | 29 | 3.717949 | 2.87×10−3 |
| Brown module | ||||
| GO:0007586 | Digestion | 20 | 1.380262 | 3.25×10−5 |
| GO:0034765 | Regulation of ion transmembrane transport | 25 | 1.725328 | 5.43×10−4 |
| GO:0071294 | Cellular response to zinc ion | 10 | 0.690131 | 2.60×10-3 |
| GO:0001764 | Neuron migration | 23 | 1.587302 | 2.94×10−3 |
| GO:0006730 | One-carbon metabolic process | 12 | 0.828157 | 3.87×10−3 |
| GO:1902476 | Chloride transmembrane transport | 21 | 1.449275 | 5.68×10−3 |
| GO:0015701 | Bicarbonate transport | 14 | 0.966184 | 7.57×10−3 |
| GO:0007218 | Neuropeptide signaling pathway | 21 | 1.449275 | 2.13×10−2 |
| GO:0070098 | Chemokine-mediated signaling pathway | 17 | 1.173223 | 2.90×10−2 |
| GO:0045926 | Negative regulation of growth | 9 | 0.621118 | 3.00×10−2 |
| GO:0008202 | Steroid metabolic process | 13 | 0.89717 | 3.38×10−2 |
| GO:0007267 | Cell-cell signaling | 37 | 2.553485 | 3.52×10−2 |
GO, Gene Ontology; FDR, false discovery ratio.