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. 2020 Apr 8;27(4):500–513. doi: 10.1089/cmb.2019.0309

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© Alan Kuhnle, et al., 2020. Published by Mary Ann Liebert, Inc.

This Open Access article is distributed under the terms of the Creative Commons License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited.

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FIG. 3. — Scalability of r-index, Bowtie, and CHIC (RLZ compressed, FM-index kernel) against chr19 haplotype collection size and total sequence length (megabases) with respect to index construction time (seconds) (a), index construction peak memory (megabytes) (b), index disk space (megabytes) (c), and locate time (seconds) of 100,000 one hundred base pair queries (d). Four different CHIC indexes were used, using different combinations of prefix size and maximum query length, each labeled as CHIC_(prefix size)p_(max query length).