Table 1.
Measures of association between virus pairs where co-detections occurred as determined by 2 × 2 contingency tables with Fisher's exact test.
| HAdV | HCoV | IFAV | HBoV | HEV | HMPV | HRSV | HRV | KIPyV | HPIV | WUPyV | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Total detections | 31 | 54 | 34 | 101 | 15 | 67 | 71 | 331 | 30 | 36 | 34 |
| Single detections number (% of total) | 16 (51.6%) | 39 (72.22%) | 25 (73.5%) | 39 (38.6%) | 7 (46.7%) | 51 (76.1%) | 51 (71.8%) | 250 (75.5%) | 12 (40%) | 32 (88.9%) | 9 (26.5%) |
| Co-detections number (% of total) | 15 (48.4%) | 15 (27%) | 9 (26.5%) | 62 (61.4%) | 8 (53.3%) | 16 (23.9%) | 20 (28.2%) | 78 (23.6%) | 18 (60%) | 4 (11.1%) | 25 (73.5%) |
| HAdV | 0.50 | 0.67 | 0.12 | 1.0000 | 0.06 | 0.07 | <0.0001 | 1.00 | 0.40 | 1.00 | |
| 0.36, 0.05–2.70 | 1.29, 0.29–5.63 | 2.00, 0.87–4.61 | 0.63, 0.04–10.76 | 0.13, 0.01–2.19 | 0.12, 0.01–2.05 | 0.18, 0.07–0.47 | 0.69, 0.09–5.23 | 0.26, 0.02–4.30 | 0.60, 0.08–4.550 | ||
| HCoV | 0.10 | 1.00 | 0.62 | 0.15 | 0.02 | <0.0001 | 0.16 | 0.06 | 0.10 | ||
| 0.15, 0.01–2.52 | 0.96, 0.44–2.10 | 0.35, 0.02–5.93 | 0.32, 0.08–1.34 | 0.14, 0.00–0.87 | 0.09, 0.03–0.22 | 0.17 0.01–2.87 | 0.14, 0.01–2.37 | 0.15, 0.01–2.52 | |||
| IFAV | 0.46 | 1.00 | 0.56 | 0.04 | <0.0001 | 1.00 | 0.25 | 1.00 | |||
| 0.52, 0.16–1.74 | 0.57, 0.03–9.76 | 0.54, 0.13–2.30 | 0.11, 0.00–0.92 | 0.06, 0.01–0.24 | 0.62, 0.08–4.72 | 0.23, 0.01–3.907 | 0.54, 0.07–4.10 | ||||
| HBoV | 0.49 | 0.006 | 0.004 | <0.0001 | 0.44 | 0.34 | 0.01 | ||||
| 0.38, 0.05–2.30 | 0.240.07–0.77 | 0.22, 0.07–0.72 | 0.40, 0.26–0.63 | 1.41, 0.56–3.54 | 0.49, 0.15–1.62 | 2.85, 1.34–6.04 | |||||
| HEV | 1.00 | 0.40 | 0.45 | 0.51 | 1.00 | 0.55 | |||||
| 0.63, 0.08-4.84 | 0.26, 0.01–4.38 | 0.65, 0.23–1.86 | 1.52, 0.19–11.949 | 0.54, 0.03–9.18 | 1.32, 0.17–10.38 | ||||||
| HMPV | 0.0006 | <0.0001 | 0.35 | 0.04 | 0.56 | ||||||
| 0.06, 0.003–0.88 | 0.10, 0.04–0.21 | 0.29, 0.04–2.20 | 0.11, 0.00–0.74 | 0.54, 0.13–2.30 | |||||||
| HRSV | <0.0001 | 0.55 | 0.02 | 0.16 | |||||||
| 0.17, 0.09–0.338 | 1.29, 0.44–3.81 | 0.11, 0.00–0.69 | 0.24, 0.032–1.78 | ||||||||
| HRV | 0.03 | <0.0001 | 0.30 | ||||||||
| 0.41, 0.18–0.91 | 0.03, 0.003–0.19 | 0.68, 0.34-–1.37 | |||||||||
| KIPyV | 0.40 | 0.06 | |||||||||
| 0.27, 0.01–4.45 | 3.07, 1.00–9.38 | ||||||||||
| HPIV | 1.00 | ||||||||||
| 0.51, 0.07–3.858 | |||||||||||
| WUPyV | |||||||||||
Probabilities of association by chance (p-values) are shown above the corresponding OR and 95% CI for each pair. Figures indicating significant associations (p < 0.05) are shown in bold. The number of each virus detected (n) is shown along the top. The total detections of each virus are divided into whether they occurred by themselves (single detections) or concurrently with one or more other viruses (co-detections; (> = 2 detections in one sample).