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. 2019 Jul 5;25(12):1927–1938. doi: 10.1093/ibd/izz130

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Published by Oxford University Press on behalf of Crohn’s & Colitis Foundation 2019.

This work is written by (a) US Government employee(s) and is in the public domain in the US.

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FIGURE 3. — Microbial abundances shift in response to antibiotic exposure. ASVs were filtered for presence in at least 20% of samples. Testing for significant differences in ASV abundance between weeks 0 and 4 was performed using DeSeq2 in either the MET or MET+AZ treatment group. Only ASVs with significant differences in abundance between weeks 0 and 4 are displayed. Abundances of ASVs were log₁₀-transformed before plotting and partitioned by treatment group and week. Colored bars at the left end of the heatmap denote ASV responses to the treatments.