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. Author manuscript; available in PMC: 2020 Aug 24.
Published in final edited form as: Nat Ecol Evol. 2020 Feb 24;4(3):324–333. doi: 10.1038/s41559-020-1106-9

Figure 3. AESB topology, divergence times and gain-loss events.

Figure 3

(a) Topology of the AESB highlighting the hierarchical cluster HC2600_1272 (yellow), with symbols indicating ancient human economy of S. enterica positive samples. Selected divergence time estimates for the HC2600_1272 cluster are shown in years BP (95% highest posterior density intervals, see also Supplementary Table 2). (b) Gain-loss results for all SPI’s and selected genes. For SPI’s, colour gradient relates to the average of %-genes covered over 95% across all strains per branch. For genes, colour gradient according to mean percentage covered across all strains per branch. Tepos: 16th century Mexican.