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. Author manuscript; available in PMC: 2020 Aug 24.
Published in final edited form as: Nat Ecol Evol. 2020 Feb 24;4(3):324–333. doi: 10.1038/s41559-020-1106-9

Extended Data Fig. 3. Maximum likelihood phylogeny of the AESB based on SNPs in positions present in 95% of strains.

Extended Data Fig. 3

Maximum likelihood tree of the AESB including the high coverage ancient genomes and 463 S. enterica genomes, considering all SNPs covered in at least 95% of strains (130,036 SNPs). New ancient genomes are shown in red, and previously reported ancient genomes (Tepos) in pink.