TABLE 2A.
Clinical samples used in this study and results obtained by the dRRT-PCR and the RT-PCR methods used as reference; experimental samples from in vivo experiments performed at INIA-CISA.
| Virus | Species | Animal Id | Type of Sample | DPI* | DUPLEX RRT-PCR | WNV-1/WNV-2/USUV RRT-PCRa | BAGV RRT-PCRb (Ct) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| JE (Ct) | NTAYA (Ct) | WNV-1 (Ct) | WNV-2 (Ct) | USUV (Ct) | ||||||
| WNV L1 (GE-1b/B Spain 2007) | House sparrow | 11 | Brain | 7 | 28.44 | No Ct | 31.25 | No Ct | No Ct | |
| Kidney | 27.37 | No Ct | 29.15 | No Ct | No Ct | |||||
| Spleen | 24.01 | No Ct | 25.68 | No Ct | No Ct | |||||
| Heart | 26.85 | No Ct | 28.53 | No Ct | No Ct | |||||
| Liver | 24.78 | No Ct | 27.15 | No Ct | No Ct | |||||
| WNV L2 (Austria/2008) | Red-legged partridge | 7 | Brain | 7 | 28.41 | No Ct | No Ct | 32.45 | No Ct | |
| Kidney | 26.43 | No Ct | No Ct | 31.20 | No Ct | |||||
| Spleen | 27.6 | No Ct | No Ct | 35.19 | No Ct | |||||
| Heart | 24.48 | No Ct | No Ct | 30.89 | No Ct | |||||
| Liver | 36.75 | No Ct | No Ct | 39.03 | No Ct | |||||
| Blood | 35.84 | No Ct | No Ct | No Ct | No Ct | |||||
| Feather | 23.38 | No Ct | No Ct | 30.01 | No Ct | |||||
| BAGV (Spain H/2010) | Red-legged partridge | 4 | Brain | 6 | No Ct | 31.19 | 29.54 | |||
| Kidney | No Ct | 26.17 | 25.81 | |||||||
| Spleen | No Ct | 24.31 | 25.69 | |||||||
| Heart | No Ct | 23.47 | 25.81 | |||||||
| Liver | No Ct | 26.05 | 26.84 | |||||||
| Grey partridge | 4 | Brain | 4 | No Ct | 35.83 | 27.11 | ||||
| Kidney | No Ct | 22.97 | 21.19 | |||||||
| Spleen | No Ct | 24.27 | 19.66 | |||||||
| Heart | No Ct | 29.16 | 20.5 | |||||||
| Liver | No Ct | 26.37 | 22.45 | |||||||
| Blood | No Ct | 24.95 | 20.81 | |||||||
| Feather | No Ct | 23.28 | 19.98 | |||||||