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. 2020 Apr 21;7:176. doi: 10.3389/fvets.2020.00176

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Copyright © 2020 Alkhamis, Li and Torremorell.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Maximum clade credibility (MCC) phylogeny of the HA segment of human-like H3 swine influenza virus collected between January 2015 and June 2018 in the United States. The trees are inferred from eight phylodynamic model combinations (node-age and BSSVS priors). The color of the branches represents the most probable location state of their descendant nodes, and their color-coding corresponds to the upper left bar chart, which represents the root location state posterior probabilities (RSPP) for each state. (A–D) Trees inferred from four node-age + asymmetric BSSVS priors. (E–H) Trees inferred from four node-age + symmetric BSSVS priors.