TABLE 1.

Proteins most enriched in wild-type or HPF-deficient ribosomes^a

Gene name by category	Protein	Log2(Δhpf-wt)b	Log2(hpfΔdimer-wt)c
Most depleted in HPF-deficient mutants
hpf	Hibernation-promoting factor (HPF)	−2.64 ± 0.21	−0.83
fusA	Elongation factor G	−0.75 ± 0.07	−0.52
rpsC	30S ribosomal protein S3	−0.61 ± 0.18	−0.37
rpsB	30S ribosomal protein S2	−0.53 ± 0.13	−0.31
Most enriched in HPF-deficient mutants
rbfA	Ribosome biogenesis factor RbfA	1.15 ± 0.01	0.57
rsfS	Ribosome silencing factor RsfS	0.83 ± 0.08	0.84
rimM	Ribosome maturation factor RimM	0.71 ± 0.21	0.48
rimP	Ribosome maturation factor RimP	0.65 ± 0.28	0.48

^aValues were taken from Data Set S1 in the supplemental material. The highest-ranking ribosomal proteins or known ribosome-interacting proteins with either positive or negative values are listed.

^bThe average from two biological replicates.

^cReports values from one sample.