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. 2020 Feb 18;12(4):325–344. doi: 10.1093/gbe/evaa031

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© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 7. — —(A) Comparison of the five-gene cluster among the strains. Comparison percentage using Paraburkholderia terrae strain BS001 as a reference and based on the Microscope genoscope platform. (B) Phylogenetic analysis of alkyl hydroperoxidase AhpD across Paraburkholderia species, including type strains and mycosphere-derived strains. Burkholderia glumae was used as an outgroup. The tree was built with RAxML using the amino acid substitution model PROTGAMMA, default matrix setting (Dayhoff) and hill-climbing algorithm. Bootstrap value 1,000 replicates. Bootstrap confidence values ≥ 70% are indicated. Purple box represents the proposed “species-cluster,” and red triangles indicate the type strains.