TABLE 1.

Data summary of the E. granulosus transcriptome and microRNAome.

Samples ID	RNA Sequencing			Small RNA Sequencing
	Total Clean Reads	High Quality Reads Genome Mapped (%)*	High Quality reads Transcripts mapped (%)#	Total Clean Reads (18−30 nt)	High Quality Reads Genome Mapped (%)*	High Quality Reads miRNAs Mapped (%)#
0 h	56,805,518	41,477,149 (73.02%)	27,483,646 (66.26%)	24,185,579	13,168,238 (54.45%)	7,249,946 (55.05%)
NSD
24 h	45,865,714	27,534,887 (60.03%)	20,807,190 (75.57%)	22,664,542	13,374,352 (59.01%)	8,162,254 (61.03%)
7 days	47,387,288	30,641,662 (64.66%)	21,343,889 (69.66%)	22,053,979	12,312,969 (55.83%)	6,996,764 (56.82%)
14 days	55,597,998	38,266,289 (68.83%)	28,976,806 (75.72%)	22,113,695	11,027,824 (49.87%)	5,184,590 (47.01%)
SSD
24 h	55,037,642	33,752,124 (61.33%)	19,137,393 (56.70%)	21,173,443	10,502,453 (49.60%)	3,546,522 (33.77%)
7 days	48,910,972	28,462,253 (58.19%)	18,073,569 (63.50%)	26,331,190	9,608,894 (36.49%)	5,773,972 (60.09%)
14 days	42,987,048	31,534,216 (73.36%)	23,182,955 (73.52%)	25,430,586	13,366,873 (52.56%)	6,859,834 (51.32%)

NSD, PSC without strobilization stimulus (no bile salt added); SSD, PSC with strobilization stimuli (bile salt added). * The percentages were calculated by dividing the counts of total clean reads. ^#The percentages were calculated by dividing the counts of high quality reads genome mapped.