Table 1. SNP markers associated with grain yield identified in a diverse training panel of US Pacific Northwest winter wheat lines (N = 456 lines).

SNP	Dataset	P-value	FDR adj. P-value, q a	Minor allele frequency	Percent variation explained, R2	Reference
S1A_497083519	PUL15	1.91E-06	0.01	0.38	0.02
S1A_535858090 b	PUL18	4.13E-10	6.43E-06	0.34	0.03
S1B_8150831	PUL18	3.90E-06	0.01	0.14	0.05	[43]
S2A_752287563	LND17	7.92E-06	0.02	0.36	0.01	[43]
S2B_239862383	LND17	1.38E-06	0.01	0.37	1.0E-04	[43]
S2B_775486161	PUL18	5.71E-06	0.01	0.41	0.02	[43,44]
S2D_639821303	LND17	1.52E-05	0.03	0.18	0.02
S2D_642029978	LND17	5.66E-06	0.02	0.08	7.0E-04
S3A_22831895	LND18	4.68E-06	0.04	0.42	0.02	[42,43]
S3A_567971108	PUL15	3.04E-06	0.01	0.19	0.01	[42,43]
S3B_482345832	PUL18	2.51E-05	0.05	0.47	2.5E-03	[43]
S3B_561570016	PUL18	4.49E-07	3.0E-03	0.26	0.02	[43]
S3B_818284683	PUL15	6.39E-07	5.0E-03	0.47	0.02	[43]
S3D_325690	LND17	2.25E-06	0.01	0.21	3.3E-03
S5B_29125444	LND17	4.18E-07	0.01	0.08	5.0E-04	[43]
S5B_47592949	PUL18	2.83E-06	0.01	0.31	0.01	[43]
S5B_679577399	LND18	8.40E-06	0.04	0.32	0.02	[43]
S6A_601959488	LND17	1.42E-05	0.04	0.21	1.2E-03	[43,44]
S6B_118986455	LND18	1.05E-08	1.0E-04	0.15	0.03	[44]
S6B_33331876	PUL18	4.43E-06	0.01	0.50	8.0E-04	[44]
S7A_545581556	PUL15	1.44E-05	0.03	0.46	0.06	[42–44]
S7A_61774265	PUL15	6.86E-08	1.0E-03	0.36	0.02	[42–44]
S7B_711208053	PUL15	1.29E-06	0.01	0.45	0.02
S7D_635365239	PUL15	6.48E-06	0.02	0.46	0.01	[44]

^a FDR- False discovery rate

^b Significant SNP markers in bold text were included in the prediction model as fixed effects for a GWAS-assisted genomic selection scenario (GS2)