Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2020 Apr 29;21:104. doi: 10.1186/s13059-020-01998-1

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

PMC Copyright notice

Fig. 2 — The wheat genome displays ICONS. a TADtool analysis of a 50-Mb region of chromosome 4D (Chr4D:325000000-375000000). Triangle heatmap of Hi-C interaction frequency (top panel), positions of the identified TADs indicated by black bars (middle panel), and plot of the insulation index (bottom panel). b Zoom-in of the 5-Mb region of Chr4D:345000000-350000000 in a, showing a triangle heatmap of Hi-C interaction frequency (top panel) and insulation index (bottom panel). c Position of genes along the 5-Mb region shown in b. d 2D heatmap showing the interaction frequency in a region (chr3B-1000000–5000000) of the Hi-C map. The dashed circles highlight the hotspots of interaction. Genes are represented by black bars. e Level of insulation index on genes. Median insulation index over genes (red line) and random genomic intervals (blue line) (top panel). Heatmap of insulation index over genes (bottom panel)