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. 2016 Jun 10;32(19):2928–2935. doi: 10.1093/bioinformatics/btw323

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© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

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Fig. 3. — (A) Plot of all predicted LRIs with $P < 0.05$ (113) found in the Flavivirus alignment of six sequences. The outer circle represents the genome. The histogram represents the number of LRIs per alignment position. The inner circle shows all predicted interactions between all genome positions. Gray—all new LRIs; black—LRIs corresponding to B and C. The plot was created with Circos (Krzywinski et al., 2009). (B) Experimentally verified LRI, which can be predicted by LRIscan, named 5′–3′ CS (Friebe and Harris, 2010). (C) Highly interesting new LRIs predicted by LRIscan. A complete list including all predicted LRIs can be found at the supplementary page (Color version of this figure is available at Bioinformatics online.)