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. 2016 Jun 10;32(19):2928–2935. doi: 10.1093/bioinformatics/btw323

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© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

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Fig. 6. — (A) Plot of all predicted LRIs with $P < 0.05$ (115) found in the HIV-1 alignment of 200 sequences. The outer circle represents the genome. The histogram represents the number of LRIs per alignment position. The inner circle shows all predicted interactions between all genome positions. Gray—all new LRIs; black—LRIs corresponding to B and C. The plot was created with Circos (Krzywinski et al., 2009). (B) Experimentally verified LRIs, which can be predicted by LRIscan, named LDI, U5-AUG and TAR-TAR (Abbink and Berkhout, 2003; Andersen et al., 2004; Beerens and Kjems, 2010; Huthoff and Berkhout, 2001). (C) Highly interesting new LRIs predicted by LRIscan. A complete list including all predicted LRIs can be found at the supplementary page (Color version of this figure is available at Bioinformatics online.)