Table 3.
Probable antigenic epitopes and MHC II Allele interaction based on NETMHC II PRED 3.2 server and VaxiJen 2.0 scores (≥1.0) for antigenicity prediction. (* - sign is used for no interaction any HLA Allele under consideration).
| NCBI-GenBank ID | MHC II Allele | POS | Core peptide | 1- LOG50K | Affinity(nM) | Vaxijen score | Antigenicity |
|---|---|---|---|---|---|---|---|
| QHD43417.1 | – | – | – | – | – | – | NO INTERACTION |
| QHD43418.1 | – | – | – | – | – | – | NO INTERACTION |
| QHD43419.1 | HLA-DRB1*04:01 | 55 | WLLWPVTA | 0.282 | 2375.78 | 1.0631 | ANTIGEN |
| QHD43421.1 | HLA-DRB1*01:01 | 74 | VYQLRARSV | 0.484 | 267.05 | 1.3108 | ANTIGEN |
| HLA-DRB1*07:01 | 74 | VYQLRARSV | 0.342 | 1235.08 | 1.3108 | ANTIGEN | |
| QHD43423.2 | – | – | – | – | – | – | NO INTERACTION |