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. 2020 Apr 29;11:2071. doi: 10.1038/s41467-020-15848-y

Table 1.

Assembly statistics.

Breed Assembly Software Assembly level Number of sequencesa Number of gaps N50 (Mb) Assembly size (Gb)
Angus PacBio CANU Haplotig 1747 0 29.4 2.6
Angus PacBio+Hi-C SALSA2 Scaffold 1515 235 104.6 2.6
Angus PacBio+Optical map Bionano Access Scaffold 1595 181 35.2 2.6
Angus UOA_Angus_1 PBJelly, Aarow, custom scripts Chromosome 1435 277 102.8 2.6
Brahman PacBio CANU Haplotig 1585 0 23.4 2.7
Brahman PacBio+Hi-C SALSA2 Scaffold 1370 216 72.6 2.7
Brahman PacBio+Optical map Bionano Access Scaffold 1353 268 31.7 2.7
Brahman UOA_Brahman_1 PBJelly, Aarow, custom scripts Chromosome 1251 302 104.5 2.7

aThere are 1405 and 1220 unplaced haplotigs in the final chromosome-level Angus and Brahman assemblies, respectively. These unplaced haplotigs comprise ~3.8% of total bases in the Angus assembly and ~2.1% of total bases in the Brahman assembly. Only the Brahman assembly has a complete mitochondrion sequence.