Table 2.

Polymorphism statistics.

Breeda	Reference	SNP	INDEL	BND	DEL	DUP	INV
Angus	Angus	10,615,122	1,381,548	38	84	22	3
Brahman	Angus	24,930,357	2,928,526	311	641	86	22
Angus	Brahman	16,504,067	2,090,735	159	182	40	11
Brahman	Brahman	23,876,357	2,804,421	279	481	97	18

BND complex structural variant, DEL deletion, DUP duplication, INV inversion.

^aBreed here refers to the ~10× WGS short reads used to align to the reference. BND, DEL, DUP, and INV are structural variant types called in Lumpy.