Online-only Table 1.
Comparison of the two O. granulata genome assemblies.
| Entries | This study | IRGC Acc. No. 10211711 | |
|---|---|---|---|
| Genome sequencing | Source country | China | India |
| Genome size (Mb) * | 792 | 785 | |
| Sequencing technology | Illumina; Hi-C | Illumina; PacBio | |
| Raw Illumina data (Gb) | 133.38 | 105.157 | |
| Sequence coverage (×)** | 167 | 131 | |
| Raw Hi-C/PacBio data (Gb) | 109.41 | 16.615 | |
| Sequence coverage (×)** | 137 | 21 | |
| Assembly statistics | Assembly size (Mb) | 736.66 | 776.96 |
| Whole-genome coverage (%) | 93 | 98.1 | |
| Contig N50 (kb) | 43.9 | 262.05 | |
| Contig number (#) | 29,963 | 4,618 | |
| Scaffold N50 (kb) | 916.3 | 262.05 | |
| Scaffold number (#) | 2,393 | 4,618 | |
| Largest scaffold (Mb) | 4.04 | 1.59 | |
| Length of anchored scaffolds (Mb) | 723.2 | — | |
| Anchoring rate (%) | 98.2 | — | |
| GC content (%) | 45.87 | 46.32 | |
| Gene annotation | Gene number (#) | 40,131 | 40,116 |
| Functionally annotated gene number (#) | 34,436 | 33,901 | |
| Complete BUSCO (%) | 96.53 | 95 | |
| Total gene length (Mb) | 125.53 | 102.74 | |
| Average gene length (bp) | 3,152 | 2,561.19 | |
| Total CDS length (bp) | 35.78 | 40.61 | |
| Average CDS length (bp) | 892 | 1,012.28 | |
| Number of exons (#) | 165,272 | 162,369 | |
| Average exon length (bp) | 283 | 250.1 | |
| Average exons per gene | 4.1 | 4.05 | |
| Total intron length (Mb) | 78.84 | 62.14 | |
| Number of introns (#) | 125,141 | 122,253 | |
| Average intron length (bp) | 630 | 508 | |
| ncRNA annotation | tRNA length (bp) | 75,160 | 82,079 |
| rRNA length (bp) | 133,694 | 99,297 | |
| miRNA length (bp) | 29,471 | 30,787 | |
| Repeat sequence annotation | Total repeat length (Mb) | 456.567 | 528.04 |
| Repeat percentage (%) | 61.98 | 67.96 | |
| DNA transposon length (bp) | 72,407,795 | 68,393,246 | |
| LINE length (bp) | 1,459,061 | 7,169,231 | |
| SINE length (bp) | 125,812 | 59,741 | |
| LTR length (bp) | 374,444,649 | 460,976,797 | |
| Copia (bp) | 41,126,935 | 54,901,814 | |
| Gypsy (bp) | 278,699,663 | 407,036,517 | |
| Others (bp) | 54,618,051 | 28,158,459 | |
| Other length (bp) | 8,130,028 | 1,696,213 |
*The genome size was estimated by the k-mer method;
**The genome size was estimated to be 800 Mb.