Table 9.
Occurrence of simple sequence repeats (SSRs) in the O. granulata genome.
| Repeat type | Number | Average length (bp) | Total length (kb) | Proportion (%) |
|---|---|---|---|---|
| Mono-nucleotide | 9,397 | 14 | 132.89 | 5.14 |
| Di-nucleotide | 35,467 | 16 | 576.31 | 22.28 |
| Tri-nucleotide | 64,905 | 13 | 860.99 | 33.28 |
| Tetra-nucleotide | 53,484 | 13 | 676.26 | 26.14 |
| Penta-nucleotide | 11,720 | 16 | 182.83 | 7.07 |
| Hexa-nucleotide | 8,366 | 19 | 157.78 | 6.10 |
| Total | 183,339 | 14 | 2,587.06 | 100 |
Note that the minimum repeat unit size was set at twelve for mono-nucleotides, at six for di-nucleotides, at four for tri-nucleotides, and at three for tetra- to hexa-nucleotides.