TABLE 1.
Comparative genomic information of five pectinase producing bacteria.
Bacterium | NCBI accession number | Chromosomal genome size (Mb) | GC content | Protein coding genes (CDS) | Total genes | Average protein length (a.a.) | Isolated from | References |
Dickeya dadantii DSM 18020 | NZ_CP023467.1 | 5.00 | 56.40% | 4,271 | 4,531 | 326 | Pelargonium capitatum | Cheng et al., 2017 |
Dickeya dadantii 3937 | NC_014500.1 | 4.92 | 56.30% | 4,244 | 4,485 | 323 | Saintpaulia ionantha | Glasner et al., 2011 |
Dickeya solani IPO 2222 | NZ_CP015137.1 | 4.92 | 56.20% | 4,132 | 4,329 | 339 | Solanum tuberosum | Khayi et al., 2016 |
Bacillus subtilis subsp. subtilis str. 168 | NC_000964.3 | 4.22 | 43.50% | 4,237 | 4,871 | 290 | Mutant strain of B. subtilis Marburg1 | Kunst et al., 1997; Belda et al., 2013; Borriss et al., 2018; Barbe et al., 2009 |
Bacillus halodurans C-125 | NC_002570.2 | 4.20 | 43.70% | 3,950 | 4,134 | 298 | Soil | Nakasome et al., 2000; Takami and Horikoshi, 2000; Takami et al., 2000 |