Table 1.
Proteomic analysis and disulfide bonds in reviewed proteins.
| Species (Uniprot proteome ID) | Number of proteins / proteins with Cys (percent) | Number of amino acids all / number of Cys (percent) | Median protein length all / proteins with Cys / proteins without Cys | Median Cys per protein all / proteins with Cys | Number of reviewed proteins / proteins with disulfide-bond (percent) / proteins with at least one interchain disulfide-bond | Median length of disulfide-bond containing proteins | Median disulfide-bonds (max.) |
|---|---|---|---|---|---|---|---|
| Reviewed SwissProt | 561 176 / 464 173 (83%) | 201 585 439 / 2 787 012 (1.38%) | 294 / 329 / 141 | 3 / 4 | 561 176 / 33 995 (6%) / 3 309 | 296 | 2 (166) |
| A. thaliana (UP000006548) | 27 466 / 25 852 (94%) | 11 122 644 / 207 856 (1.87%) | 347 / 361 / 125 | 6 / 6 | 15 821 / 1 145 (7%) / 42 | 250 | 3 (8) |
| D. melanogaster (UP000000803) | 13 798 / 13 018 (94%) | 7 403 990 / 142 035 (1.92%) | 395 / 412 / 150 | 7 / 7 | 3 559 / 349 (10%) / 30 | 513 | 3 (16) |
| E. coli (UP000000625) | 4 391 / 3 694 (84%) | 1 354 362 / 15 752 (1.16%) | 271 / 296 / 137 | 3 / 3 | 4 389 / 98 (2%) / 7 | 284 | 1 (4) |
| H. sapiens (UP000005640) | 20 660 / 19 979 (97%) | 11 425 374 / 263 334 (2.30%) | 410 / 421 / 125 | 9 / 9 | 20 305 / 3 591 (18%) / 334 | 362 | 2 (159) |
| O. sativa (UP000059680) | 43 603 / 40 126 (92%) | 13 382 401 / 260 236 (1.94%) | 228 / 247 / 115 | 4 / 5 | 4 046 / 283 (7%) / 19 | 275 | 1 (16) |
| S. cerevisiae (UP000002311) | 6 049 / 5 470 (90%) | 2 936 363 / 37 272 (1.27%) | 396 / 428 / 163 | 5 / 5 | 6 049 / 93 (2%) / 15 | 261 | 2 (14) |
| T. gammatolerans (UP000001488) | 2 157 / 1 286 (60%) | 636 517 / 3 603 (0.57%) | 251 / 298 / 198 | 1 / 2 | 181 / 0 (0%) / 0 | - | - |