Table 4:
Repeat content of the P. maximus genome based on RepeatModeler and RepeatMasker analysis
| Element | Count | Length occupied (bp) | % of genome |
|---|---|---|---|
| SINEs | 125,121 | 20,067,275 | 2.19 |
| MIRs | 21,406 | 3,059,644 | 0.33 |
| LINEs | 86,373 | 26,983,591 | 2.94 |
| LINE1 | 803 | 463,519 | 0.05 |
| LINE2 | 4,883 | 2,601,659 | 0.28 |
| L3/CR1 | 4,374 | 1,588,697 | 0.17 |
| LTR elements | 9,334 | 4,731,793 | 0.52 |
| DNA elements | 121,409 | 31,845,557 | 3.47 |
| hAT-Charlie | 1,312 | 394,533 | 0.04 |
| TcMar-Tigger | 4,548 | 1,478,364 | 0.16 |
| Unclassified | 612,341 | 153,700,734 | 16.74 |
| Total interspersed repeats | 237,328,950 | 25.84 | |
| Small RNA | 4,096 | 563,615 | 0.06 |
| Simple repeats | 174,931 | 9,099,659 | 0.99 |
| Low complexity | 25,658 | 1,411,700 | 0.15 |
| Total length (of 918.3 Mb): | 247,513,725 | 26.95 |