Table 1.
Equilibrium dissociation constants (Kds) and other thermodynamic parameters derived for interactions between RNA (single stranded RNA and G-quadruplexes formed by TERRA RNA repeats) and proteins (UP1, UP1+RGG and the isolated RGG-box) using ITC experiments
| S.No. | Experiment | K d (μM) | ΔG (kcal/mol) | ΔH (kcal/mol) | TΔS (kcal/mol) | n |
|---|---|---|---|---|---|---|
| 1 | UP1:ssRNA-18 | 2.37±0.49 | −7.67±1.58 | −19.7±1.23 | −12.03±2.81 | 1.04±0.05 |
| 2 | UP1+RGG:ssRNA-18 | 2.28±0.26 | −7.69±0.86 | −20.4±0.71 | −12.71±1.57 | 0.97±0.03 |
| 3 | UP1:TERRA-6 | 2.02±0.17 | −7.76±0.64 | −31.31±1.4 | −23.55±2.04 | 1.22±0.04 |
| 4 | UP1+RGG:TERRA-6 | 2.38±0.23 | −7.66±0.75 | −38.84±2.74 | −31.18±3.48 | 1.14±0.07 |
| 5 | UP1:TERRA-12 | 2.04±0.47 | −7.75±1.77 | −36.38±5.61 | −28.63±7.38 | 0.93±0.12 |
| 6 | UP1+RGG:TERRA-12 | 1.07±0.14 | −8.13±1.08 | −43.01±2.48 | −34.88±3.56 | 0.88±0.04 |
| 7 | UP1:TERRA-24 | 1.71±0.17 | −7.86±0.76 | −29.66±0.95 | −37.52±1.70 | 0.80±0.02 |
| 8 | UP1+RGG:TERRA-24 | 0.92±0.17 | −8.23±1.53 | −41.88±2.81 | −33.65±4.34 | 0.82±0.04 |
| 9 | UP1+RGG:TERRA-24 (with 20% PEG 200) | 3.0±0.55 | −7.53±1.40 | −40.89±4.15 | −33.36±5.55 | 1.14±0.09 |
| 10 | RGG:TERRA-24 | 9.0±4.3 | −6.88±3.31 | −0.67±0.27 | 6.21±3.58 | 1.06±0.34 |