Table 1.
Data sources for GARDEN-NET and for the present manuscript
| Data type | Cell types | Reference | Notes |
|---|---|---|---|
| Promoter Capture Hi-C | Human heamatopoietic primary cells | (2) | v.37 |
| Promoter Capture Hi-C | mESC | (8) | v.mm9 |
| Hi-C | mESC | (31) | v. mm9 |
| Hi-C | GM06990 | (1) | v.37 |
| ChIP-Seq (78 features) | mESC | (26) | v.mm9 |
| ChIP-Seq (4 hist. marks) | Human primary Monocytes, Neutrofils and Tcells | (32) | v.37 |
| ChIP-Seq (6 hist. marks) | Human primary B cells | (33) | v.38 |
| ChIP-Seq (2 hist. marks) | GM06990 | (34) | v.37 |
| ATAC-seq | Human primary B cells | (33) | v.38 |
| Repli-Chip | GM12978 | (35) | v.37 |
| Repli-Chip | GM06990 | (35) | v.37 |
| RNAseq | Human primary Monocytes, Neutrofils and Tcells | (32) | |
| RNAseq | Human primary B cells | (33) | |
| RNAseq | Human primary haematopoietic cells | (36) | |
| RNAseq | GM06990 | (34) | |
| DNA methylation | Human primary Monocytes, Neutrofils and Tcells | (32) | WGBS |
| DNA methylation | GM06990 | ENCODE (GSM999353) | 450K |