TABLE 6.
Acid-evolved clone J3-1 mutations.*‡
| Replicon | Start bp | End bp | Mutation | Annotation | Gene description |
| Chromosome | 749,943 | 749,954 | (11 bp)1→2 | ISH: coding (562/2007 nt) | [vng0985H→] |
| Chromosome | 1,089,129 | 1,089,137 | (8 bp)1→2 | ISH: coding (15/789 nt) | [vng1467G→] bop (bacterio-opsin). |
| Chromosome | 1,163,363 | A→G | K197R (AAA→AGA) | [vng1561→] Ferredoxin | |
| Chromosome | 1,229,749 | 1,229,760 | (11 bp)1→2 | ISH: coding (582/849 nt) | In vng1650 |
| PNRC100 | 0 | 7,788 | Δ7788 bp | ISH7-1 deleted | [vng7001←] – [←vng_RS13745] |
| PNRC100 | 71,210 | 74,656 | Δ3447 bp | ISH2 mediated | (vng RS13790→) – [←vng7073] SOS response peptidase (deleted) |
| PNRC100 | 133,743 | 142,521 | Δ8779 bp | ISH8-2, 3-3 mediated | (vng RS12330←) – (→vng7127) Arsenic resistance operon (deleted) |
| PNRC100 | 143,909 | 150,253 | Δ6345 bp | ISH3-3, 2 mediated | (vng RS12880→) – [→vng7136] ssDNA-binding protein A (deleted) |
| PNRC200 | 0 | 7,760 | Δ7760 bp | ISH 7-1 deleted | (vng6001H←) – [←vng6011H] |
| PNRC200 | 71,219 | 74,595 | Δ3377 bp | ISH 2 mediated | (vng6094H→) – [←vng6097C] SOS response peptidase (deleted) |
| PNRC200 | 244,422 | 244,430 | 9 bp(1→2) | ISH: intergenic | (vng6313G←) / (vng6315G←) arcD Arginine:ornithine antiporter/ornithine carbamoyItransferase |
| PNRC200 | 249,147 | 249,157 | 11 bp(1→2) | ISH: coding | [vng6318G←] arcR Arginine catabolism transcription a I regulator |
| PNRC200 | 262,603 | 265,437 | Δ2835 bp | ISH 3-2, 8-3 mediated/ISH 8-3 deleted | (vng_RS11685←) / (→vng6331H) |
| PNRC200 | 309,256 | 309,812 | Δ557 bp | ISH 2, 8-3 mediated | (vng6393H←) – (←vng6395H) |
| PNRC200 | 311,213 | 323,320 | Δ12108bp | ISH 8-3, 11 mediated | (vng6396H→) – (←vng6420H) arsR transcriptional regulator, phzF phenazine biosynthesis |
| PNRC200 | 324,386 | 332,792 | Δ8407 bp | ISH 11 mediated | (vng_RS12000→) – (→vng6441H) |
* “Annotation” column code: “ISH *** mediated” = flanking ISH elements, missense mutations in blue. “Gene” column code: (mutation starts or ends before this gene name), → ← indicates gene directionality, [mutation starts, ends, or is entirely contained within this gene name], “-” indicates intervening omitted genes found in description, “/” indicates mutation is between two genes. ‡Highlight indicates mutations associated with acid evolution.