TABLE 2.

Summary of the 11 individuals from the Heuchera group sequenced in this study.

	T. polyphylla (JXTM)	T. polyphylla (NPKB)	T. polyphylla (NPSG)	T. polyphylla (QHXH)	T. cordifolia (USAA)	T. cordifolia (USLF)	T. trifoliata	M. diphylla	M. formosana	H. richardsonii	H. villosa
Number of reads	19,350,774	19,945,556	15,431,294	28,464,000	17,188,180	18,746,754	17,640,500	49,735,470	17,440,054	35,240,056	35,072,040
Number of reads after trim	16,090,346	17,241,720	13,331,090	23,386,919	14,711,553	14,129,448	15,338,179	44,127,123	15,159,154	31,288,357	30,888,194
Average length after trim (bp)	125.04	100.43	102.02	126.61	129.11	108.51	134.73	132.58	129.58	135.50	135.53
Minimal nucleotide coverage (×)	54	13	11	72	21	54	28	17	18	70	64
Maximal nucleotide coverage (×)	1675	289	217	3110	1254	1684	1174	3534	649	5996	4856
Average nucleotide coverage (×)	1263	221	159	2534	935	717	727	1960	493	4682	3733
Total plastid DNA size	154,902	154,717	154,729	154,850	155,368	155,400	155,390	155,445	154,407	155,330	154,850
Length of large single copy (LSC) region	86,088	85,892	85,914	86,035	86,086	86,056	86,149	86,242	85,506	86,060	86,058
Length of inverted repeat (IR) region	25,396	25,388	25,391	25,397	25,633	25,636	25,622	25,631	25,608	25,633	25,633
Length of small single copy (SSC) region	18,022	18,049	18,033	18,021	18,046	18,072	17.997	17,941	17,685	18,004	18,037
Total GC content (%)	37.70	37.70	37.80	37.80	37.80	37.80	37.80	37.80	37.90	37.80	37.80
LSC	35.80	35.80	35.80	35.80	35.80	35.80	35.80	35.80	36.00	35.80	35.80
IR	43.10	43.10	43.10	43.10	43.10	43.10	43.10	43.10	43.10	43.10	43.10
SSC	32.10	32.10	32.10	32.10	32.20	32.10	32.10	32.20	32.30	32.20	32.20
Total number of genes	113	113	113	113	113	113	113	113	113	113	113
Protein encoding	79	79	79	79	79	79	79	79	79	79	79
tRNA	30	30	30	30	30	30	30	30	30	30	30
rRNA	4	4	4	4	4	4	4	4	4	4	4
Number of genes duplicated in IR	19	19	19	19	19	19	19	19	19	19	19