TABLE 5.
Gene sets enriched in phenotype high and low.
| MSigDB collection | Gene set name | NES | NOM p-val | FDR q-val |
| c2.cp.kegg. v6.2.symbols.gmt | KEGG_ENDOCYTOSIS | 1.718 | 0.010 | 0.145 |
| KEGG_RNA_DEGRADATION | 1.806 | 0.012 | 0.173 | |
| KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS | 1.711 | 0.029 | 0.142 | |
| KEGG_ALANINE_ASPARTATE_AND_GLUTAMATE_METABOLISM | 1.766 | 0.006 | 0.171 | |
| KEGG_AMINOACYL_TRNA_BIOSYNTHESIS | 1.821 | 0.016 | 0.186 | |
| KEGG_ARACHIDONIC_ACID_METABOLISM | 1.531 | 0.021 | 0.674 | |
| KEGG_GLYCEROPHOSPHOLIPID_METABOLISM | 1.742 | 0.006 | 0.161 | |
| KEGG_HISTIDINE_METABOLISM | 1.473 | 0.045 | 0.626 | |
| KEGG_PURINE_METABOLISM | 1.576 | 0.028 | 0.166 | |
| KEGG_SPHINGOLIPID_METABOLISM | 1.670 | 0.024 | 0.129 | |
| KEGG_ADHERENS_JUNCTION | 1.890 | 0.002 | 0.191 | |
| KEGG_BASAL_TRANSCRIPTION_FACTORS | 1.874 | 0.004 | 0.150 | |
| KEGG_CELL_CYCLE | 1.744 | 0.033 | 0.178 | |
| KEGG_REGULATION_OF_ACTIN_CYTOSKELETON | 1.729 | 0.010 | 0.160 | |
| KEGG_PATHWAYS_IN_CANCER | 1.622 | 0.029 | 0.138 | |
| KEGG_WNT_SIGNALING_PATHWAY | 1.937 | 0.000 | 0.204 | |
| KEGG_ERBB_SIGNALING_PATHWAY | 1.710 | 0.013 | 0.132 | |
| KEGG_NOTCH_SIGNALING_PATHWAY | 1.678 | 0.029 | 0.138 |
Gene sets with NOM P < 0.05 and FDR q < 0.25 are considered as significant. FDR, false discovery rate; NES, normalized enrichment score; NOM, nominal.