Table 2.
Software used and repositories for custom scripts and data.
| Part | Description (link) | Company/Author | Item number (RRID) |
|---|---|---|---|
| ScanM (v2.04) | 2P imaging software running under IGOR Pro | Written by M. Müller (MPI Neurobiology, Martinsried), and T.E. | |
| pClamp (v10.6) | Electrophysiology Data Acquisition & Analysis Software | distributed by Molecular Devices LLC | |
| IGOR Pro (v6) | https://www.wavemetrics.com | Wavemetrics, Lake Oswego, OR | IGOR Pro v6 (SCR_000325) |
| Python (v3.6.7) | http://www.python.org/ | ||
| R (v2.3) | The R project http://www.r-project.org/ | ||
| QDSpy (v0.77) | Visual stimulation software https://github.com/eulerlab/QDSpy | Written by T.E, supported by Tom Boissonnet (EMBL, Monterotondo) | (SCR_016985) |
| Scikit-learn (v0.20.0) | Software package for Python | ref. 68 | |
| Scikit-Image (v0.14.2) | Software package for Python | ref. 69 | |
| Itsadug (v2.3) | Software package for R | ref. 70 | |
| Mgcv (v1.8-24) | Software package for R | ref. 65 | |
| emmeans (1.4.4) | Software package for R | ref. 71 | |
| NEURON (v7.7.0) | Simulation environment for modelling individual neurons and networks of neurons | ref. 66 | |
| Custom scripts and data | http://retinal-functomics.net/ |