Table 1.
ViroPanel—Viruses Targeted for Hybrid Capture
| Virus | Accession no. | Target region(s) | Genome coordinates |
|---|---|---|---|
| HBV (strain ayw) | NC_003977.2 | Complete genome | 1–3182 |
| HHV-8 (KSHV) | NC_009333.1 | LANA 1 | 123,010–124,784 |
| HHV-8 (KSHV) | NC_009333.1 | LANA 2 | 126,456–127,446 |
| HPV16 | K02718.1 | Complete genome | 1–7904 |
| HPV18 | X05015.1 | Complete genome | 1–7857 |
| HPV31 | J04353.1 | E6, E7 | 108–856 |
| HPV33 | M12732.1 | Complete genome | 1–7909 |
| HPV35H | X74477.1 | E6, E7 | 110–861 |
| HPV39 | M62849.1 | E6, E7 | 107–921 |
| HPV45 | X74479.1 | Complete genome | 1–7858 |
| HPV51 | M62877.1 | E6, E7 | 96–865 |
| HPV52 | X74481.1 | E6, E7 | 102–852 |
| HPV56 | X74483.1 | E6, E7 | 102–889 |
| HPV58 | D90400.1 | E6, E7 | 110–870 |
| HPV59 | X77858.1 | E6, E7 | 55–865 |
| HPV66 | U31794.1 | E6, E7 | 102–889 |
| HPV68a | DQ080079.1 | E6, E7 | 1–816 |
| HPV73 | X94165.1 | E6, E7 | 102–843 |
| HPV82 | AB027021.1 | E6, E7 | 102–867 |
| MCPyV (R17b isolate) | NC_010277.2 | Complete genome | 1–5387 |
Accessioned reference sequences for each of the 19 targeted viruses are available at https://www.ncbi.nlm.nih.gov/nuccore.
HBV, hepatitis B virus; HHV-8, human herpesvirus 8; HPV, human papillomavirus; KSHV, Kaposi sarcoma–associated herpesvirus; MCPyV, Merkel cell polyomavirus.