Table 6.
SNV Summary
| Virus—ViroPanel (samples, n) | Target region | Target size, bp | Mean captured territory, bp | SNV range | Mean SNVs/virus∗ | Mean % nucleotide variation† |
|---|---|---|---|---|---|---|
| HBV (4) | Full genome | 3182 | 3182 | 6–30 | 14 | 0.44 |
| HHV-8 (KSHV) (4) | LANA1/2 | 2764 | 2764 | 0–32 | 9.5 | 0.34 |
| HPV16 (6) | Full genome | 7904 | 7732 | 4–35 | 18.33 | 0.24 |
| HPV18 (3) | Full genome | 7857 | 4844 | 14–19 | 17.33 | 0.44 |
| HPV33 (3) | Full genome | 7909 | 6987 | 1–10 | 5 | 0.07 |
| HPV35 (3) | E6, E7 | 751 | 751 | 9–17 | 13.33 | 1.78 |
| HPV56 (1) | E6, E7 | 787 | 787 | NA | 45 | 5.72 |
| HPV82 (1) | E6, E7 | 765 | 765 | NA | 33 | 4.31 |
| HPV6 (1) | Unbaited | NA | 528 | NA | 32 | 6.06 |
| HPV11 (1) | Unbaited | NA | 724 | NA | 25 | 3.45 |
| HPV53 (1) | Unbaited | NA | 784 | NA | 34 | 4.34 |
| HPV61 (1) | Unbaited | NA | 703 | NA | 6 | 0.85 |
| MCPyV (49) | Full genome | 5387 | 3644 | 0–20 | 5.16 | 0.15 |
SNV range and mean SNVs per virus type listed for samples 1 to 101. Mean percentage nucleotide variation calculated using SNVs with an allele fraction >30% and the mean captured territory. Individual sample values listed in Supplemental Table S6.
HBV, hepatitis B virus; HHV-8, human herpesvirus 8; HPV, human papillomavirus; KSHV, Kaposi sarcoma–associated herpesvirus; MCPyV, Merkel cell polyomavirus; NA, not applicable; SNV, single nucleotide variant.
∗
On the basis of SNVs with an allele fraction >30%.
†
SNVs/captured territory.