TABLE 1.
Summary of genome sequences reported
Strain | BioSample accession no. | GenBank accession no. | SRA accession no. | Diagnosis | Host origin department in Colombia | No. of contigs >0 bp | No. of contigs >1,000 bp | Genome size (bp)a | Coverage (×) | GC content (%)b | N50 (bp)b | No. of genes | Population |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GCT27 | SAMN13950472 | CP048601 | SRR11183158 | Chronic active gastritis | Valle del Cauca | 57 | 32 | 1,643,791 | 102 | 39.000 | 110,298 | 1,559 | hspAfrica1WAfricaNAmerica |
GCT43 | SAMN13950473 | CP048600 | SRR11183157 | Chronic active gastritis | Risaralda | 68 | 35 | 1,642,398 | 102 | 39.046 | 98,340 | 1,566 | hspAfrica1SAfricaMiscAmerica |
GCT97 | SAMN13950474 | CP048599 | SRR11183156 | Chronic active gastritis | Tolima | 60 | 40 | 1,656,586 | 103 | 38.847 | 94,297 | 1,569 | hspSWEuropeColombia |
Including contigs of ≥0 bp.
Based on contigs of ≥500 bp.