Antibodies |
Anti-Actin |
Santa Cruz |
sc-147778; RRID: AB_626632 |
Anti-PRMT5 |
Abeam |
Abeam ab109451; RRID: AB_10863428 |
Anti-SDMA |
Cell signaling |
#13222; RRID: AB_2714013 |
Anti-ADMA |
Cell signaling |
#13522; RRID: AB_2665370 |
Anti-PRMT1 |
Cell signaling |
CST #2449; RRID: AB_2237696 |
Anti-MMA |
Cell signaling |
#8015; RRID: AB_10891776 |
Anti-EZH2 |
Cell signaling |
CST #5246; RRID: AB_10694683 |
Anti- γH2Ax |
Cell signalling |
CST #9718; RRID: AB_2118009 |
Biological Samples |
AML primary patient samples |
Princess Margaret Hospital, Memorial Sloan Kettering Cancer Center, & Weill Cornell College of Medicine |
N/A |
Chemicals, Peptides, and Recombinant Proteins |
GSK3203591 |
SGC Toronto |
https://thesgc.org/chemical-probes/GSK591 |
MS023 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/MS023 |
EPZO15666 |
Tocris |
Cat. No. 6516 |
GSK3368712 |
GSK |
N/A |
E7107 |
H3 Biomedicine Inc. |
N/A |
I-BRD9 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/l-BRD9 |
SGC-CBP30 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/CBP30 |
BI-9564 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/BI-9564 |
I-CBP112 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/l-CBP112 |
MS049 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/MS049 |
UNC0638 |
SGC Toronto |
https://thesgc.org/chemical-probes/UNC0638 |
SGC707 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/SGC707 |
GSK484 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/GSK484 |
10X2 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/IOX2 |
GSK-J4 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/gskj1 |
Vorinostat |
Cayman chemicals |
CAS
149647-78-9
|
GSK2 334470 |
Cayman chemicals |
CAS 1227911-45-6 |
SGC0946 |
SGC Toronto |
https://www.thesgc.org/chemical-probes/SGC0946 |
PD0332991 |
Cayman chemicals |
CAS 827022-32-2 |
CCT244747 |
Cayman chemicals |
CAS
1404095-34-6
|
PF-477736 |
Cayman chemicals |
CAS 952021-60-2 |
BMS-265246 |
Cayman chemicals |
CAS
582315-72-8
|
Irinotecan |
Cayman chemicals |
CAS 100286-90-6 |
SCH772984 |
Cayman chemicals |
CAS 942183-80-4 |
Alitretinoin |
Cayman chemicals |
CAS 5300-03-8 |
CX-4945 |
Cayman chemicals |
CAS 1009820-21-6 |
Phenoxodiol |
Sigma |
CAS 81267-65-4 |
5Z-7-oxozeaenol |
Cayman chemicals |
CAS
253863-19-3
|
Critical Commercial Assays |
Caspase-Glo. 3/7 luminescence assay |
Promega |
G8090 |
Cell titer Glo |
Promega |
G7570 |
MTS assay |
Promega |
G3582 |
PTMScan® Asymmetric Di-Methyl Arginine Motif [adme-R] Kit |
Cell Signaling Technologies |
Kit #13474 |
PTMScan® Symmetric Di-Methyl Arginine Motif [sdme-RG] Kit |
Cell Signaling Technologies |
Kit #13563 |
PTMScan Mono-Methyl Arginine 13 Motif [mme-RG] Kit |
Cell Signaling Technologies |
Kit #12235 |
Deposited Data |
RNA-seq data |
This paper |
GEO:GSE123774
|
MS-proteomics data |
This paper |
PRIDE: PXD012007 |
Experimental Models: Cell Lines |
Human: K562 cells |
ATCC |
CLL-243 |
Human: THP1 cells |
ATCC |
TIB-202 |
Human: M0LM13 cells |
DSMZ |
ACC 554 |
Human: U937 cells |
ATCC |
CRL-1593.2 |
Human: K562 SRSF2P95H/WT knockin cells |
Horizon Discovery |
N/A |
Human: K562 SF3B1K700E/WT knockin cells |
Horizon Discovery |
N/A |
Human: TF1 cells |
ATCC |
CRL-2003 |
Human: 0CI-AML5 cells |
DSMZ |
ACC 247 |
Human: F-36P cells |
DSMZ |
ACC 543 |
Human: GDM-1 cells |
ATCC |
CRL-2627 |
Human: KO52 cells |
JCRB |
CVCL-1321 |
Human: HNT34 cells |
DSMZ |
ACC 600 |
Human: MonoMac6 cells |
DSMZ |
ACC 124 |
Human: 5–16 Cre20 (SRSF2 P95L) |
(Chang et al., 2018) |
N/A |
Human: N-2.12 (isogenic normal) |
(Chang et al., 2018) |
N/A |
Experimental Models: Organisms/Strains |
Mice: Srsf2P95H/+
|
(Kim et al., 2015). |
N/A |
Mice: MLL-AF9/Vav-cre Srsf2WT/WT
|
(Kim et al., 2015). |
N/A |
Mice: MLL-AF9/Vav-cre Srsf2P95H/WT
|
(Kim et al., 2015). |
N/A |
Mice: Vav-cre transgenic mice (B6.Cg-Tg(Vav1-icre)A2Kio/J) |
The Jackson Laboratory |
JAX: 008610 |
Oligonucleotides |
Human EZH2 F |
(Lee et al., 2016) |
TTTCATG CAACACCC AACACT |
Human EZH2 R |
(Lee et al., 2016) |
CCCTGCTTCCCTATCACTGT |
Human ATF2 F |
This paper |
AGTTACATGTGAATTCTG CCAG G |
Human ATF2 R |
This paper |
CTCAAATG G ACTCG CCAACTC |
Human INTS3 F |
This paper |
ATGCCAAG CTGGCTTTGTTTT |
Human INTS3 R |
This paper |
TCCGACATATGGTTGTCCATCTC |
Human TRPT1 F |
This paper |
GG CCAACCAG G GCCATT |
Human TRPT1 R |
This paper |
ATCACCAG CCAAG GAAAG GG |
Human HDAC7 F |
This paper |
GG AAG AATCCACTG CTCCGA |
Human HDAC7 R |
This paper |
GACTGGG CAAAGTGG AAG GG |
Human LEF1 F |
This paper |
CCACCCATCCCGAGAACATC |
Human LEF1 R |
This paper |
AGG CTTCACGTG CATTAGGT |
Anti-sense oligonucleotide SCR |
This paper |
CGGUGUGUGUAUCAUUCUCUAGUGU |
Anti-sense oligonucleotide EZH2
|
This paper |
U GAAU C U U CU G U CCAAAAU CCAACAGGCAAU AUA |
sgRNA 1 sequence for EZH2
|
This paper |
TTATCAG AAG G AAATTTCC G |
sgRNA 2 sequence for EZH2
|
This paper |
TTATG ATG G GAAAGTACACG |
Recombinant DNA |
LentiCRISPR v2 |
N/A |
Addgene: 52961 |
Software and Algorithms |
Cytoscape 3.4.0 |
(Shannon et al., 2003) |
https://cytoscape.org/ |
Reactome Fl |
(Wuetal., 2014) |
N/A |
plogo web application |
(O’Shea et al., 2013) |
N/A |
hmLINKER |
(Massignani et al., 2019) |
N/A |
hmSEEKER |
(Massignani et al., 2019) |
N/A |
Prism 7.0 |
Graphpad |
https://graphpad.com/ |
lmageJ |
NIH |
https://irnagej-nih-gov.libproxy1.nus.edu.sg/ij/index.html |
STAR |
(Dobin et al., 2013) |
https://github.com/alexdobin/STAR |
HTSeq |
(Anders et al., 2(15) |
N/A |
R |
R Core Team |
https://www.r-project.org/ |
Bioconductor |
(Huber et al., 2015) |
N/A |
DESeq2 |
(Love et al., 2014) |
10.18129/B9.bioc.DESeq2 |
rMATS |
(Shen et al., 2014) |
http://maseq-mats.sourceforge.net/ |
ggsashimi |
(Garrido-Martin et al., 2018) |
https://github.com/guigolab/ggsashimi |