REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Monoclonal anti-HA antibody produced in mouse | Sigma-Aldrich | Cat.#: H3663; RRID: AB_262051 |
Monoclonal anti-β-actin antibody produced in mouse | Sigma-Aldrich | Cat.#: A5441; RRID: AB_476744 |
Monoclonal anti-VSV-M (23H12) antibody | KeraFast | Cat.#: EB0011; RRID: AB_2734773 |
Monoclonal anti-mouse, peroxidase-coupled | Dianova | Cat.#: 115-035-003; RRID: AB_10015289 |
Anti-VSV-G antibody (I1, produced from CRL-2700 mouse hybridoma cells) | ATCC | Cat.# CRL-2700; RRID: CVCL_G654 |
Bacterial and Virus Strains | ||
VSV∗ΔG-FLuc | Berger Rentsch and Zimmer, 2011 | N/A |
One Shot™ OmniMAX™ 2 T1R Chemically Competent E. coli | Thermo Fisher Scientific | Cat.#: C854003 |
Chemicals, Peptides, and Recombinant Proteins | ||
Lipofectamine LTX with Plus Reagent | Thermo Fisher Scientific | Cat.#: 15338100 |
Furin inhibitor, decanoyl-RVKR-CMK | Tocris | Cat.#: 3501 |
May-Grünwald solution | Sigma-Aldrich | Cat.#: 63590 |
Giemsa solution | Sigma-Aldrich | Cat.#: GS500 |
Critical Commercial Assays | ||
Beetle-Juice Kit | PJK | Cat.#: 102511 |
Experimental Models: Cell Lines | ||
293T | DSMZ | Cat.#: ACC-635; RRID: CVCL_0063 |
Calu-3 | Laboratory of Stephan Ludwig | ATCC Cat# HTB-55; RRID: CVCL_0609 |
Vero | Laboratory of Andrea Maisner | ATCC Cat# CRL-1586; RRID: CVCL_0574 |
Vero-TMPRSS2 | Hoffmann et al., 2020 | N/A |
Oligonucleotides | ||
SARS-S (BamHI) F CTTGGATCCGCCACCATGTTTATTTTC TTATTATTTC |
Sigma-Aldrich | N/A |
SARS-SΔ18 (XbaI) R CTTTCTAGACTACTTGCAGCAAGAA CCACAAGAGC |
Sigma-Aldrich | N/A |
SARS-SΔ18 (-)STOP (XbaI) R CTTTCTAGACTTGCAGCAAG AACCACAAGAGC |
Sigma-Aldrich | N/A |
SARS-2-S (BamHI) F GAATTCGGATCCGCCACCATGTTCGT GTTTCTGGTGCTGC |
Sigma-Aldrich | N/A |
SARS-2-SΔ18 (XbaI) R AAGGCCTCTAGACTACTTGCAGCA GCTGCCACAGC |
Sigma-Aldrich | N/A |
SARS-2-SΔ18 (-)STOP (XbaI) R AAGGCCTCTAGACTTGCA GCAGCTGCCACAGC |
Sigma-Aldrich | N/A |
SARS-S (SARS) F CAGACAAACAGCCCCAGACGGGCCAG AAGTACTAGCCAAAAATCTATTG |
Sigma-Aldrich | N/A |
SARS-S (SARS) R TCTGGCCCGTCTGGGGCTGTTTGTCT GTGTATGGTAACTAGCACAAATGC |
Sigma-Aldrich | N/A |
SARS-S (RaTG) F CAGACAAACAGCAGAAGTACTAGCCA AAAATC |
Sigma-Aldrich | N/A |
SARS-S (RaTG) R TCTGCTGTTTGTCTGTGTATGGTAACTA GCACAAATGC |
Sigma-Aldrich | N/A |
SARS-2-S (SARS) F GTTTCTTTATTACGTTCTGTGGCCAGC CAGAGCATC |
Sigma-Aldrich | N/A |
SARS-2-S (SARS) R ACGTAATAAAGAAACTGTCTGGTAGC TGGCACAGATG |
Sigma-Aldrich | N/A |
SARS-2-S (RaTG) F CAGACAAACAGCAGATCTGTGGCCAGC CAGAGCATC |
Sigma-Aldrich | N/A |
SARS-2-S (RaTG) R GCTGGCCACAGATCTGCTGTTTGTCTG TGTCTGGTAGC |
Sigma-Aldrich | N/A |
SARS-2-S (delta) F CAAACAGCCCCGCATCTGTGGCCAGCC AGAGCATC |
Sigma-Aldrich | N/A |
SARS-2-S (delta) R GCTGGCCACAGATGCGGGGCTGTTTGTC TGTGTCTGGTAGC |
Sigma-Aldrich | N/A |
SARS-2-S (opt) F CGAAGACGAAAAAGATCTGTGGCCAGCCA GAGCATC |
Sigma-Aldrich | N/A |
SARS-2-S (opt) R TCTTTTTCGTCTTCGGCTGTTTGTCTGTGT CTGG |
Sigma-Aldrich | N/A |
pCG1 Seq F CCTGGGCAACGTGCTGGT | Sigma-Aldrich | N/A |
pCG1 Seq R GTCAGATGCTCAAGGGGCTTCA | Sigma-Aldrich | N/A |
SARS-S 387F TGTTATACGAGCATGTAAC | Sigma-Aldrich | N/A |
SARS-S 790F AAGCCAACTACATTTATGC | Sigma-Aldrich | N/A |
SARS S 1194F TGATGTAAGACAAATAGCG | Sigma-Aldrich | N/A |
SARS S 1575F TATTAAGAACCAGTGTGTC | Sigma-Aldrich | N/A |
SARS S 1987F GTGCTAGTTACCATACAG | Sigma-Aldrich | N/A |
SARS S 2391F CTAAAGCCAACTAAGAGG | Sigma-Aldrich | N/A |
SARS S 2787F TCAACTGCATTGGGCAAG | Sigma-Aldrich | N/A |
SARS-2-S 651F CAAGATCTACAGCAAGCACACC | Sigma-Aldrich | N/A |
SARS-2-S 1380F GTCGGCGGCAACTACAATTAC | Sigma-Aldrich | N/A |
SARS-2-S 1992F CTGTCTGATCGGAGCCGAGCAC | Sigma-Aldrich | N/A |
SARS-2-S 2648F TGAGATGATCGCCCAGTACAC | Sigma-Aldrich | N/A |
SARS-2-S 3286F GCCATCTGCCACGACGGCAAAG | Sigma-Aldrich | N/A |
pCG1-V5 F TCCCTAACCCTCTCCTCGGTCTCGATTCTACGTG AAAGCTGATCTTTTTCCCTCTGCC |
Sigma-Aldrich | N/A |
pCG1-V5 R GACCGAGGAGAGGGTTAGGGATAGGCTTACCG CATGCCTGCAGGTTTAAACAGTCG |
Sigma-Aldrich | N/A |
pCG1-XhoI R CTCCTCGAGTTCATAAGAGAAGAGGG | Sigma-Aldrich | N/A |
Recombinant DNA | ||
Plasmid: pCG1-SARS-S | Hoffmann et al., 2013 | N/A |
Plasmid: pCG1-SARS-S-HA | Hoffmann et al., 2020 | N/A |
Plasmid: pCG1-SARS-2-S | Hoffmann et al., 2020 | N/A |
Plasmid: pCG1-SARS-2-S-HA | Hoffmann et al., 2020 | N/A |
Plasmid: pCG1-SARS-SΔ18 | Hoffmann et al., 2013 | N/A |
Plasmid: pCG1-SARS-SΔ18-V5 | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18 | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18-V5 | This paper | N/A |
Plasmid: pCG1-SARS-SΔ18 (SARS-2) | This paper | N/A |
Plasmid: pCG1-SARS-SΔ18-V5 (SARS-2) | This paper | N/A |
Plasmid: pCG1-SARS-SΔ18 (RaTG) | This paper | N/A |
Plasmid: pCG1-SARS-SΔ18-V5 (RaTG) | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18 (SARS) | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18-V5 (SARS) | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18 (RaTG) | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18-V5 (RaTG) | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18 (delta) | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18-V5 (delta) | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18 (opt) | This paper | N/A |
Plasmid: pCG1-SARS-2-SΔ18-V5 (opt) | This paper | N/A |
Plasmid: pCAGGS-MERS-S-V5 | Gierer et al., 2013 | N/A |
Plasmid: pCAGGS-VSV-G | Brinkmann et al., 2017 | N/A |
Plasmid: pCAGGS-DsRed | Hoffmann et al., 2013 | N/A |
Plasmid: pCG1 | Laboratory of Roberto Cattaneo | N/A |
Plasmid: pCG1-V5 | This paper | N/A |
Software and Algorithms | ||
Hidex Sense Microplate Reader Software | Hidex Deutschland Vertrieb GmbH | https://www.hidex.de/ |
ChemoStar Imager Software (version v.0.3.23) | Intas Science Imaging Instruments GmbH | https://www.intas.de/ |
ZEN imaging software | Carl Zeiss | https://www.zeiss.com/ |
Clustal Omega | European Molecular Biology Laboratory – European Bioinformatics Institute (EMBL-EBI) | https://www.ebi.ac.uk/Tools/msa/clustalo/; Madeira et al., 2019 |
Adobe Photoshop CS5 Extended (version 12.0 3 32) | Adobe | https://www.adobe.com/ |
GraphPad Prism (version 8.3.0(538)) | GraphPad Software | https://www.graphpad.com/ |
YASARA (version 19.1.27) | YASARA Biosciences GmbH | http://www.yasara.org/; Krieger and Vriend, 2014 |
Microsoft Office Standard 2010 (version 14.0.7232.5000) | Microsoft Corporation | https://products.office.com/home |
Other | ||
Prefusion structure of SARS-CoV spike glycoprotein (5X5B) | Yuan et al., 2017 | https://www.rcsb.org/structure/5X5B |