Table 1.
Database and bioinformatic tools for virology studies.
| Tool name | Function | URL | Reference |
|---|---|---|---|
| GeneMark | ORF identification | http://opal.biology.gatech.edu/GeneMark/genemarks.cgi | 16 |
| ORF Finder | ORF identification | http://www.ncbi.nlm.nih.gov/gorf/gorf.html | 17 |
| BLAST | Homology searching | http://www.ncbi.nlm.nih.gov/BLAST/ | N/A |
| SMART | Pattern/motif recognition | http://smart.embl-heidelberg.de/ | 18 |
| IEDB | Epitope analysis | http://www.immuneepitope.org | 19 |
| SPLIT 4.0 | Protein secondary structure prediction | http://split.pmfst.hr/split/4/ | 20 |
| SWISS-MODEL | 3-D structure modeling | http://swissmodel.expasy.org/ | 21 |
| I-TASSER | 3-D structure modeling | https://zhanglab.ccmb.med.umich.edu/ | 22 |
| Drugbank | Drug prediction | https://www.drugbank.ca/ | 23 |
| SeeSAR | Drug prediction | https://www.biosolveit.de/SeeSAR/ | N/A |