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. 2020 Apr 21;26(5):1035–1045. doi: 10.1007/s12298-020-00786-2

Table 2.

Primer sequences and PCR assay parameter of genes encoding cell cycle regulatory proteins of tea used in semi-quantitative RT-PCR assay

S. No Gene name NCBI Acc. No TIPA locus name Primer sequence (5′-3′) Product size (bp) No. of cycles Annealing temperature (°C)
1 Histone H2A HM003232 TEA025242.1 F: GGAGCTCCGGTCTACCTCGC 150 26 65
R: TGAATGTTAGGCATCACTCCGCCA
2 Histone H2B.3 GW696866 TEA025244.1 F: GAGAAAGCTCCGGCGGAGAAGAA 300 24 63
R: TCAAGAGCTAGTGAACTTAGTAACCGCC
3 Histone H3 HM003305 TEA032511.1 F: ATGGCTCGTACAAAGCAGACAGCTCG 350 24 63
R: TCAAGCTCTCTCGCCTCGAATCCTCC
4 Histone H4 HM003230 NA F: ATGTCGGGAAGAGGAAAGGGAGGAA 250 24 63
R: CTAACCCCCAAACCCATAGAGAGTTCTC
5 Cyclin B JF795471 TEA021407.1 F: TGATTGACTGGCTCATTGAGGTGC 450 28 60
R: ACTTGGTATGCCTCTCGCTTGTCT
6 Cyclophilin HM003242 TEA002681.1 F: ATGTTGAGATTGCCGGAAAACCTGCTG 325 23 66
R: TCACAAAGGAAGTTCGCCGCTGTCA
7 Cyclin-D1 X83369 TEA017808.1 F: ATCCTCTGTTGTCAATCCCCAC 200 27 56
R: AAGAGGATTCATCACTTGGCCT
8 Cyclin D3 AB247282 TEA014197.1 F: CAGCTCTCACTGCAATTCTTGCCA 300 27 65
R: TGGGTTTTCAGTCCAAGCCTCCT
9 Cyclin dependent kinase A AB247281 TEA024500.1 F: TGTGGATGTGTGGTCAGTGG 200 22 65
R: ACAGTGGCCAGGTCCTTAGA
10 Elongation factor 2 JK341471 TEA022285.1 F: TCTGAGGGCAGCAACTTCAG 350 34 55
R: CGGGGCATTATACTCCAGGG
11 Tubulin alpha-3 DQ444294 TEA008342.1 F: TTGCTTTTGGAGCGCTTGTC 350 26 55
R: CGAGGGTATGGCACAAGGTT
12 Ubiquitin-conjugating enzyme E2 variant 1D HM003308 TEA006425.1 F: GAGCACACTTCAGCCCATGGCA 500 28 65
R: TGGGGGCCACATGACAGTCCTT
13 Ubiquitin-40S ribosomal protein S27 HM003234 TEA024638.1 F: ACCCTCGCCGATTACAACATCCA 300 27 65
R: CCCCAGAACACTCAGAAACCACCA
14 Ubiquitin-40S ribosomal protein S27 protein HM003307 TEA024638.1 F: TATGCCGGGGGAGAGAGACAGA 400 22 63
R: AGTCAACAGGGTCTTCTCAAGTGCG
15 Cs5.8S rRNA FJ004886 NA F: GCCCTCAACCTAATGGCTTC 125 22 63
R: GATATCTCGGCTCTCGCATC