Table 3:
Predicted epitopes of N, ORF3a and M proteins via Bepipred and Kolaskar & Tongaonkar antigenicity.
| Antigen | Server | Amino acid Position | Sequence |
|---|---|---|---|
| Nucleocapsid protein | Bepipred | 1-51 | MSDNGPQNQRNAPRITFGGPSDSTGSNQNGERSGARSKQRRPQGLPNNTAS |
| (QIC53221.1) | 58-85 | QHGKEDLKFPRGQGVPINTNSSPDDQIG | |
| 93-104 | RIRGGDGKMKDL | ||
| 306-310 | QFAPS | ||
| 323-321 | EVTPSGTWL | ||
| 338-347 | KLDDKDPNFK | ||
| 361-390 | KTFPPTEPKKDKKKKADETQALPQRQKKQQ | ||
| Kolaskar & Tongaonkar | 52-59 | WFTALTQH | |
| 69-75 | GQGVPIN | ||
| 83-89 | QIGYYRR | ||
| 299-315 | KHWPQIAQFAPSASAFF | ||
| 333-339 | YTGAIKL | ||
| 347-363 | KDQVILLNKHIDAYKTF | ||
| ORF3a | Bepipred | 17-28 | QGEIKDATPSDF |
| (QIC53205.1) | 61-71 | KIITLKKRWQL | |
| 213-214 | QL | ||
| 216-225 | STQLSTDTGV | ||
| Kolaskar & Tongaonkar | 44-58 | GWLIVGVALLAVFQS | |
| 74-100 | SKGVHFVCNLLLLFVTVYSHLLLVAAG | ||
| 212-217 | YQLYST | ||
| Membrane protein (QIC53207.1) | Bepipred | 5-20 | NGTITVEELKKLLEQW |
| 40-41 | AN | ||
| 132-137 | PLLESE | ||
| 180-191 | KLGASQRVAGDS | ||
| Kolaskar & Tongaonkar | 29-38 | LTWICLLQFA | |
| 46-71 | LYIIKLIFLWLLWPVTLACFVLAAVY | ||
| 83-91 | AMACLVGLM | ||
| 93-101 | LSYFIASFR |