Table 2.
Primer information and chosen substitution models for regions amplified in this study. Substitution models before “/” are the best-supported models inferred by jMODELTEST2 and models after “/” indicate those inferred by PARTITIONFINDER2 for the concatenated intron alignment.
| Primer name | Sequence | Primer publication | Substitution model |
|---|---|---|---|
| ACOX2-3-F | 5’-CCTSGGCTCDGAGGAGCAGAT-3’ | Salicini et al. 2011 | K80+G / K81+G |
| ACOX2-3-R | 5’-GGGCTGTGHAYCACAAACTCCT-3’ | ||
| COPS7A-4-F | 5’-TACAGCATYGGRCGRGACATCCA-3’ | Salicini et al. 2011 | HKY / K80 |
| COPS7A-4-R | 5’-TCACYTGCTCCTCRATGCCKGACA-3’ | ||
| ROGDI-7-F | 5’-CTGATGGAYGCYGTGATGCTGCA-3’ | Salicini et al. 2011 | K80+G / K81+G |
| ROGDI-7-R | 5’-CACGGTGAGGCASAGCTTGTTGA-3’ | ||
| STAT5B-16-F | 5’--CTGCTCATCAACAAGCCCGA-3’ | Matthee et al. 2001 | GTR+G / K81+G |
| STAT5B-16-R | 5’-GGCTTCAGGTTCCACAGGTTGC-3’ | ||
| cyt-b-LGL-765-F | 5’-GGCTTCAGGTTCCACAGGTTGC-3’ | Trujillo et al. 2009 | GTR+I+G |
| cyt-b -LGL-766-R | 5’-GTTTAATTAGAATYTYAGCTTTGGG-3’ |