Table 1. Number of GUX proteins found by HMMER analysis in each species, scientific name, accession number, clade that each protein belongs and the name that appears on the phylogenetic tree.
| Scientific name (reference genome version) | # GUX | Accession number | Clade | Phylogenetic tree name |
|---|---|---|---|---|
| Arabidopsis thaliana* (TAIR10) | 5 | At3g18660 | GUX 1 | Arabidopsis_thaliana_GUX1 |
| At4g33330 | GUX 2 | Arabidopsis_thaliana_GUX2 | ||
| At1g54940.1 | GUX 3 | Arabidopsis_thaliana_GUX3 | ||
| At1g77130.1 | GUX 4 | Arabidopsis_thaliana_GUX4 | ||
| At1g08990.1 | GUX 5 | Arabidopsis_thaliana_GUX5 | ||
| Brachypodium distachyon† (v3.1) | 4 | Bradi2g56810.1 | GUX 1 | Brachypodium_distachyon1 |
| Bradi1g72350.1 | GUX 2 | Brachypodium_distachyon2 | ||
| Bradi2g24737.4 | GUX 3 | Brachypodium_distachyon3 | ||
| Bradi3g45800.7 | GUX X | Brachypodium_distachyonXA | ||
| Bradi5g27680.1 | GUX X | Brachypodium_distachyonXB | ||
| Brassica oleraceae† (v1.0) | 7 | Bol030957 | GUX 1 | Brassica_oleraceae1 |
| Bol013572 | GUX 2 | Brassica_oleraceae2A | ||
| Bol017534 | GUX 2 | Brassica_oleraceae2B | ||
| Bol009658 | GUX 3 | Brassica_oleraceae3 | ||
| Bol006577 | GUX 4/5 | Brassica_oleraceae5A | ||
| Bol022153 | GUX 4/5 | Brassica_oleraceae5B | ||
| Bol022154 | GUX 4/5 | Brassica_oleraceae5C | ||
| Brassica rapa† (v1.3) | 10 | Brara.E02330.1 | GUX 1 | Brassica_rapa1A |
| Brara.A02917.1 | GUX 1 | Brassica_rapa1B | ||
| Brara.A00465.1 | GUX 2 | Brassica_rapa2A | ||
| Brara.H01273.1 | GUX 2 | Brassica_rapa2B | ||
| Brara.F01545.1 | GUX 3 | Brassica_rapa3A | ||
| Brara.H02280.1 | GUX 3 | Brassica_rapa3B | ||
| Brara.B02173.1 | GUX 3 | Brassica_rapa3C | ||
| Brara.I01695.1 | GUX 4 | Brassica_rapa4 | ||
| Brara.I05282.1 | GUX 4/5 | Brassica_rapa5A | ||
| Brara.H02850.1 | GUX 4/5 | Brassica_rapa5C | ||
| Citrus sinensis† (v1.1) | 3 | orange1.1g006648m | GUX 1 | Citrus_sinensis1 |
| orange1.1g007705m | GUX 2 | Citrus_sinensis2 | ||
| orange1.1g043696m | GUX 3 | Citrus_sinensis3 | ||
| Eucalyptus grandis† (v2.0) | 4 | Eucgr.H04942.1 | GUX 1 | Eucalyptus_grandis1 |
| Eucgr.F00232.1 | GUX 2 | Eucalyptus_grandis2 | ||
| Eucgr.F02737.1 | GUX 3 | Eucalyptus_grandis3 | ||
| Eucgr.L01540.1 | GUX 4 | Eucalyptus_grandis4 | ||
| Glycine max† (Wm82.a2.v1) | 11 | Glyma.04G214400.1 | GUX 1 | Glycine_max1A |
| Glyma.06G151900 | GUX 1 | Glycine_max1B | ||
| Glyma.05G060700.1 | GUX 1 | Glycine_max1C | ||
| Glyma.05G190200.1 | GUX 1 | Glycine_max1D | ||
| Glyma.17G242500.1 | GUX 2 | Glycine_max2A | ||
| Glyma.14G082500.1 | GUX 2 | Glycine_max2B | ||
| Glyma.04G038500.1 | GUX 2 | Glycine_max2C | ||
| Glyma.02G238200.1 | GUX 3 | Glycine_max3A | ||
| Glyma.14G122600.1 | GUX 3 | Glycine_max3B | ||
| Glyma.19G235600.1 | GUX 4 | Glycine_max4A | ||
| Glyma.10G154600.1 | GUX 4 | Glycine_max4B | ||
| Marchantia polymorpha† (v3.1) | 1 | Mapoly0120s0025.1 | OUTGROUP | Marchantia_polymorpha_OUTGROUP |
| Oryza sativa† (v7_JGI) | 3 | LOC_Os01g65780.2 | GUX 1 | Oryza_sativa1 |
| LOC_Os03g08600.1 | GUX 2 | Oryza_sativa2 | ||
| LOC_Os02g35020.1 | GUX X | Oryza_sativaX | ||
| Physcomitrella patens† (v3.3) | 1 | Pp3c1_28970V3.1 | OUTGROUP | Physcomitrella_patens |
| Populus trichocarpa† (v3.1) | 6 | Potri.007G107200.1 | GUX 1 | Populus_trichocarpa1A |
| Potri.005G061600.5 | GUX 1 | Populus_trichocarpa1B | ||
| Potri.014G029900.1 | GUX 2 | Populus_trichocarpa2 | ||
| Potri.005G187900.1 | GUX 3 | Populus_trichocarpa3 | ||
| Potri.005G033500.1 | GUX 4 | Populus_trichocarpa4A | ||
| Potri.013G022900.2 | GUX 4 | Populus_trichocarpa4B | ||
| Saccharum spp (Vettore et al., 2003) | 5 | sugarcane_contig1 | GUX 1 | Saccharum_sp1 |
| sugarcane_contig2 | GUX 2 | Saccharum_sp2 | ||
| sugarcane_contig3 | GUX 3 | Saccharum_sp3 | ||
| sugarcane_contigXA | GUX X | Saccharum_spXA | ||
| sugarcane_contigXB | GUX X | Saccharum_spXB | ||
| Setaria italica† (v2.2) | 5 | Seita.5G402400.1 | GUX 1 | Setaria_italica1 |
| Seita.9G515500.1 | GUX 2 | Setaria_italica2 | ||
| Seita.3G235400.1 | GUX 3 | Setaria_italica3 | ||
| Seita.1G193600.1 | GUX X | Setaria_italicaXA | ||
| Seita.5G386200.1 | GUX X | Setaria_italicaXB | ||
| Solanum tuberosum† (v4.03) | 5 | PGSC0003DMT400020680 | GUX 2 | Solanum_tuberosum2A |
| PGSC0003DMT400020678 | GUX 2 | Solanum_tuberosum2B | ||
| PGSC0003DMT400063796 | GUX 3 | Solanum_tuberosum3 | ||
| PGSC0003DMT400048884 | GUX 4 | Solanum_tuberosum4A | ||
| PGSC0003DMT400048888 | GUX 4 | Solanum_tuberosum4B | ||
| Sorghum bicolor† (v3.1) | 5 | Sobic.003G376700.1 | GUX 1 | Sorghum_bicolor1 |
| Sobic.001G479800.1 | GUX 2 | Sorghum_bicolor2 | ||
| Sobic.009G144200.1 | GUX 3 | Sorghum_bicolor3 | ||
| Sobic.004G177000.1 | GUX X | Sorghum_bicolorXA | ||
| Sobic.003G360500.1 | GUX X | Sorghum_bicolorXB | ||
| Theobroma cacao† (v1.1) | 5 | Thecc1EG001429t2 | GUX 1 | Theobroma_cacao1 |
| Thecc1EG033846t1 | GUX 2 | Theobroma_cacao2 | ||
| Thecc1EG035450t1 | GUX 3 | Theobroma_cacao3 | ||
| Thecc1EG026564t1 | GUX 4 | Theobroma_cacao4A | ||
| Thecc1EG026565t1 | GUX 4 | Theobroma_cacao4B | ||
| Vitis vinifera† (Genoscope.12x) | 3 | GSVIVT01026525001 | GUX 1 | Vitis_vinifera1 |
| GSVIVT01009501001 | GUX 2 | Vitis_vinifera2 | ||
| GSVIVT01000046001 | GUX 4 | Vitis_vinifera4 | ||
| Zea mays† (Ensembl-18) | 7 | GRMZM2G365544_T01 | GUX 1 | Zea_mays1A |
| GRMZM2G135743_T02 | GUX 1 | Zea_mays1B | ||
| GRMZM2G002023_T02 | GUX 1 | Zea_mays1C | ||
| GRMZM2G109431_T01 | GUX 2 | Zea_mays2 | ||
| GRMZM2G058472_T02 | GUX 3 | Zea_mays3 | ||
| GRMZM2G031581_T01 | GUX X | Zea_maysXA | ||
| GRMZM2G441987_T01 | GUX X | Zea_maysXB |
*
Accessions retrieved from TAIR database (https://www.arabidopsis.org/)
†
Accessions retrieved from Phytozome v12 database (https://phytozome.jgi.doe.gov/)
°
Accessions retrieved from SUCEST database (http://sucest-fun.org/); ESTs from sugarcane contigs are available in Table S1 (177.3KB, pdf) .