Figure 5.

Ability of paired $\left(\left|\text{SS}‐\text{H}12\right|,,\mathrm{H}{\mathrm{2}}_{\mathrm{Tot}}\mathrm{/H}{\mathrm{1}}_{\mathrm{Tot}}\right)$ values to infer the most probable number of sweeping haplotypes ν in a shared sweep. Most probable ν for each test point was assigned from the posterior distribution of $5\times {10}^6$ sweep replicates with $\nu \in \left\{0,1,\dots ,16\right\}$, drawn uniformly at random. (Top row) Ancestral sweeps for the CEU-GIH model ($\tau =1100$, $\tau /\left(2N_e\right)=0.055$ coalescent units, left) and the CEU-YRI model ($\tau =3740$, $\tau /\left(2N_e\right)=0.0935$ coalescent units, right), with $t\in [1140,3000]$ ($t/\left(2N_e\right)\in [0.057,0.15]$ coalescent units, left) and $t\in [3780,5000]$ ($t/\left(2N_e\right)\in [0.0945,0.125]$ coalescent units, right). (Bottom row) Convergent sweeps for the CEU-GIH model (left) and the CEU-YRI model (right), with $t\in [200,1060]$ ($t/\left(2N_e\right)\in [0.01,0.053]$ coalescent units, left) and $t\in [200,3700]$ ($t/\left(2N_e\right)\in [0.005,0.0925]$ coalescent units, right). Colored in red are points whose paired $\left(\left|\text{SS}‐\text{H}12\right|,\mathrm{H}{\mathrm{2}}_{\mathrm{Tot}}\mathrm{/H}{\mathrm{1}}_{\mathrm{Tot}}\right)$ values are more likely to result from hard sweeps, those colored in shades of blue are points more likely to be generated from soft sweeps, and gray indicates a greater probability of neutrality. Regions in white are those for which no observations of sweep replicates within a Euclidean distance of 0.1 exist.