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. 2020 May 4;10:7475. doi: 10.1038/s41598-020-64424-3

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Presence of EAEC virulence-related gene alleles in whole genome sequences of 39 ST31 and 16 ST40 isolates. Strains characterised phenotypically in this study are highlighted in red. Several alleles present in the VFDB were detected for aggR, pic, hlyE, ecpA, and agg3A, and the presence of each allele is indicated by a blue box. Gene presence was determined by SRST2, except for aggA where only a partial read alignment was indicated. In this case, BLAST analysis was used which showed an average nucleotide identity of 86.5%.