. 2020 May 4;10:7475. doi: 10.1038/s41598-020-64424-3

Table 2.

Detection of selected EAEC virulence genes in whole genome sequences of ST strains by using the Short Read Sequence Typing 2 tool (SRST2).

	Strain^a	Serotype	aggR^b	pic	aap	astA	hlyE	pet	ecpA	aggA (AAF/I)^c	aafA (AAF/II)	agg3A (AAF/III)	aaf5A (AAF/V)
ST31	042	O44:H18	+	+	+	+	+	+	+		+
	E103617	O130:H27	+	+	+		+		+	+
	E104946	O15:H18	+	+	+		+					+
	E104967	O15:H18	+	+	+		+					+
	E107526	O?:H27		+	+		+			+
	E099975	O15:H18	+	+	+		+					+
	E104931	O130:H27	+	+	+		+		+	+
	E104940	O130:H27	+	+	+		+			+
	E104969	O130:H27	+	+	+		+			+
ST40	1091	O111:H21	+	+	+	+	+		+				+
	1337	O111:H21	+	+	+	+	+		+				+
	146052	O?:H21		+	+	+	+		+
	153145	O111:H21	+	+	+	+	+		+				+
	221654	O111:H21	+	+	+	+	+		+				+
	232736	O111:H21	+	+	+	+	+		+				+
	E107759	O127:H21	+	+	+	+	+		+				+
	E109907	O111:H21	+	+	+	+	+		+				+

^aIsolates from cases (bold) and controls, ^bPresence of gene indicated by +,

^cCoverage threshold below 90% identity.