TABLE 4.
Evolutionary rate for rotavirus genome segments at nucleotide level
| Lineage | Evolutionary ratea
(95% HPDb
) |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| VP1 (3,267 bp) | VP2 (2,664 bp) | VP3 (2,508 bp) | VP4 (2,362 bp) | VP6 (1,356 bp) | VP7 (1,062 bp) | NSP1 (1,599 bp) | NSP2 (1,059 bp) | NSP3 (1,078 bp) | NSP4 (750 bp) | NSP5 (667 bp) | |
| 0.1MOI-1 | 2.45 (0.05–5.69) | 5.47 (0.09–11.9) | 7.08 (0.01–17.0) | 4.55 (0.06–10.9) | 19.2 (3.76–44.8) | 16.5 (0.04–41.2) | 14.7 (0.01–36.7) | 25.3 (0.07–55.7) | 58.4 (2.22–38.9) | 44.4 (1.91–122) | 23.0 (0.20–61.2) |
| 0.1MOI-2 | 3.60 (0.01–8.38) | 5.32 (0.01–13.3) | 6.66 (0.02–16.5) | 5.10 (0.01–19.4) | 57.2 (0.91–67.1) | 12.8 (0.01–32.1) | 11.0 (0.02–32.1) | 19.7 (0.08–46.9) | 29.6 (0.34–82.5) | 4.93 (0.01–15.5) | |
| 0.001MOI-1 | 1.56 (0.02–13.0) | 1.32 (0.03–5.30) | 0.70 (0.01–7.56) | 2.46 (0.04–39.5) | 3.48 (0.02–20.3) | 6.80 (0.05–15.8) | 6.28 (0.02–30.2) | 4.49 (1.14–14.0) | 12.0 (0.89–28.9) | 22.0 (3.38–46.3) | 4.93 (0.01–15.5) |
| 0.001MOI-2 | 1.68 (0.07–4.20) | 1.94 (0.03–5.16) | 2.20 (0.03–5.72) | 1.69 (0.04–3.95) | 5.95 (0.03–14.5) | 8.56 (0.01–18.8) | 7.29 (0.02–28.9) | 6.67 (0.01–19.0) | 18.9 (0.04–42.7) | 25.6 (0.01–56.0) | 21.2 (0.03–53.1) |
a
With 10−5 substitutions/nucleotide site/cycle. Genome lengths are shown as base pairs.
b
HPD, highest posterior density.