Table 1.
Characteristics of currently available computational methods for detecting APA dynamics from scRNA-seq data.
Strategy | Quantification method |
Statistical method | scRNA-seq data type |
|
---|---|---|---|---|
scAPA | Peak calling-based | Chi-squared test | 3′ end | |
Sierra | Peak calling-based | Wilcoxon rank-sum test | 3′ end | |
scDAPA | Density distribution-based | Wilcoxon rank-sum test | 3′ end, full-length |