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. 2020 May 5;10:7571. doi: 10.1038/s41598-020-64463-w

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Bootscan plots of the three rare recombinant partial-genome sequences from the HIV-1 infected blood donors. Each bootscan plot was performed with Kimura-2 model of nucleotide substitution with a window size of 200 and a step size of 20. The color-coded key represents the different subtypes, sub-subtypes and CRFs of HIV-1. (a) Shaanxi-001 env sequence. (b) Shaanxi-001 IN sequence. (c) Shaanxi-015 env sequence. (d) Shaanxi-015 IN sequence. (e) Shaanxi-017 env sequence.