Table 2:
Formation of amplicon and primer dimer in the presence of target and no target with a “worst case” pair of primers
| Ct of amplicon or primer dimer formation |
Average ΔCt | ||
|---|---|---|---|
| Primer types | With target (104 copies) | Without target (NTC) | Ct (NTC) − Ct (target) |
| Std primers | 7.6a | 6.0a | −1.6 |
| 2SAMRS-1N | 22.7 | 20.9 | −1.8 |
| 3SAMRS-1N | 27.8 | 44.5 | 16.7 |
| 4SAMRS-1N | 27.2 | 37.7 | 10.5 |
| 4SAMRS-2N | 26.6 | 35.0 | 8.4 |
| 4SAMRS-3N | 20.8 | 20.1 | −0.7 |
| 4SAMRS-4N | 18.8 | 18.1 | −0.7 |
Based on melting temperature (Fig. 3, right), these are all primer dimers at 3 mM of Mg2+.