Table 2.

The comparison results of the competing method on the independent testing set.

Method	BP			MF			CC
	Fmax	AUPR	AUC	Fmax	AUPR	AUC	Fmax	AUPR	AUC
BLAST	0.347	0.192	0.771	0.381	0.292	0.873	0.386	0.245	0.860
DeepGO	0.321	0.095	0.729	0.291	0.117	0.784	0.210	0.080	0.687
NetGO	0.173	0.048	0.594	0.386	0.243	0.919	0.217	0.092	0.669
SN2GO	0.132	0.044	0.893	0.423	0.306	0.953	0.384	0.264	0.948
SDN2GO	0.361	0.203	0.917	0.561	0.471	0.964	0.432	0.290	0.947

The bold values indicate the best values.