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. 2020 Apr 29;11:775. doi: 10.3389/fmicb.2020.00775

Table 1.

The cgMLST and MSLT results of all SToxf208 strains and two non-SToxf208 strains.

Sample XH506 XH507 XH546 XH549 XH550 XH684 XH686 XH687 XH727 XH728 XH748 XH804 XH823 XH835 XH839 XH667 XH671 XH672 XH698 XH706 XH733 XH747 XH780 XH794 XH663 XH697 Functions of the corresponding genes
SToxf 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 208 381 191
STpas 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 880 2 2 2 2 2
STcg 1069 1069 1076 710 1077 710 710 710 1101 1076 825 710 825 710 710 1088 716 716 716 1099 1104 1108 716 UN 1087 1095
Lcg 1 2 3 / /
OCL(B) OCL1 OCL1c OCL1c OCL1c OCL1c OCL1d OCL1d OCL1d OCL1c OCL1c OCL1 OCL1c OCL1c OCL1c OCL1c OCL1 OCL1d OCL1 OCL1c OCL1c OCL1d OCL1 OCL1c OCL1d OCL1d OCL1d
OCL(K) OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1 OCL1
KL(B) KL7 KL7 KL7 KL2 KL2 KL2 KL2 KL2 KL7 KL7 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL77 KL9
KL(K) KL7 KL7 KL7 KL2 KL2 KL2 KL2 KL2 KL7 KL7 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL2 KL77 KL9
The first gene set ACICU_RS04540 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 1 1 1 1 1 1 1 1 4 1 4 Hypothetical protein
ACICU_RS04550 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 12 12 12 12 12 12 12 12 4 12 4 Porin
ACICU_RS04555 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 11 11 11 11 11 11 11 11 4 11 4 Membrane protein
ACICU_RS04560 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 11 11 11 11 11 11 11 11 4 11 4 Dihydrodipicolinate synthase family protein
ACICU_RS04565 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 12 12 12 12 12 12 12 12 6 12 6 Transcriptional regulator
ACICU_RS04610 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 10 10 10 10 10 10 10 10 4 10 4 Hypothetical protein
ACICU_RS04615 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 12 12 12 12 12 12 12 12 6 12 6 Membrane protein
ACICU_RS04620 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 13 13 13 13 13 13 13 13 6 13 6 Alpha/beta hydrolase
ACICU_RS04625 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 13 13 13 13 13 13 13 13 6 13 6 Arginine:ornithine antiporter
ACICU_RS04630 4 4 4 4 4 4 4 4 4 4 4 4 4 4 4 11 11 11 11 11 11 11 11 4 11 4 Homocysteine S-methyltransferase
ACICU_RS04635 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 12 12 12 12 12 12 12 12 11 12 11 Hypothetical protein
The second gene set ACICU_RS12120 NA NA 59 59 59 59 59 59 NA NA 59 NA 59 59 59 NA 1 1 1 1 1 1 NA 1 1 1 Alpha/beta hydrolase
ACICU_RS02045 10 10 10 10 10 10 10 10 10 10 10 10 10 10 10 1 1 1 1 1 1 1 1 33 1 33 Magnesium transporter
ACICU_RS03980 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 1 1 1 1 1 1 1 1 6 1 6 Cell division protein ZipA
ACICU_RS08385 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 1 1 1 1 1 1 1 1 1 1 1 Transcriptional regulator
ACICU_RS08715 12 12 12 12 12 12 12 12 12 12 12 12 12 12 12 1 1 1 1 1 1 1 1 1 1 1 Hypothetical protein
ACICU_RS08800 67 67 67 67 67 67 67 67 67 67 67 67 67 67 67 1 1 1 1 1 1 1 1 1 1 1 NAD(FAD)-dependent dehydrogenase
ACICU_RS12140 26 26 26 26 26 26 26 26 NA NA 26 NA 26 26 26 NA 1 1 1 1 1 1 NA 1 1 1 Hypothetical protein
ACICU_RS12165 56 56 56 56 108 56 56 56 NA NA 56 56 56 56 56 1 1 1 1 1 1 1 NA 1 1 1 Acyl-CoA dehydrogenase
ACICU_RS12175 64 64 64 64 64 64 64 64 64 64 64 64 64 64 64 1 1 1 1 1 1 1 NA 1 1 1 Amino acid ABC transporter permease
ACICU_RS12510 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 1 1 1 1 1 1 1 1 6 1 6 Nickel transporter
ACICU_RS13390 49 49 49 49 49 49 49 49 49 49 49 49 49 49 49 1 1 1 1 1 1 1 1 1 1 1 Phenazine biosynthesis protein PhzF
ACICU_RS13865 42 42 42 42 42 42 42 42 42 42 42 42 42 42 42 1 1 1 1 1 1 1 1 1 1 1 MFS transporter
ACICU_RS14495 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 1 1 1 1 1 1 1 1 6 1 6 Hydrolase
ACICU_RS15635 67 67 67 67 67 67 67 67 67 67 67 67 67 67 67 1 1 1 1 1 1 1 1 1 1 1 Acyl-CoA dehydrogenase

The variable allelic genes applied in cgMLST within SToxf208 strains and their functions are listed. SToxf, types defined by the Oxford scheme; STpas, types defined by the Pasteur scheme; STcg, types defined by cgMLST; Lcg, lineages of STox208 strains determined by cgMLST; NA, notapplicable.