Table 1.
Oligonucleotide sequences for real-time RT-PCR.
| Gene | Gene bank | Left | Right | UPL (Universal Probe Library) |
|---|---|---|---|---|
| AGR2 | NM_006408.3 | ggtgggtgaggaaatccag | gtaggagagggccacaagg | 47 |
| IRGM | NM_001145805.1 | gcttgaaaaagagcagagcatt | gggcccaactgaagtgag | 63 |
| ORMDL3 | NM_139280.1 | tcaccaacctcattcacaaca | caaagggtgtccccttcac | 4 |
| XBP1∗ | NM_005080.3, NM_001079539.1 | ggagttaagacagcgcttgg | cactggcctcacttcattcc | 37 |
| HSPA5 | NM_005347.4 | aaaagcatttgggcagacc | ttaatggctgtattgggcttg | 54 |
| UBD | NM_006398.3 | agagatggctcccaatgct | ggcatcaaaggtcattaaatcc | 34 |
| UBE2L3 | NM_003347.2 | atgcattctggggaaggag | ttgcggatttcttcaagctc | 75 |
| CUL2∗ | NM_003591.3, NM_001198777.1, NM_001198778.1, NM_001198779.1 | gaatgctgctccgagaaatc | ccccatggattactttctgg | 22 |
| FOXC2 | NM_005251.2 | ggggacctgaaccacctc | aacatctcccgcacgttg | 3 |
| CYLD∗ | NM_001042412.1, NM_001042355.1, NM_015247.2 | cagtctccggaatattctttgg | cagtgaaaccttgaccacga | 11 |
| FOXO4∗ | NM_005938.3, NM_001170931.1 | cgagggactggacttcaact | ggctcaagggtaaagagtagatatga | 36 |
| TNFRSF14 | NM_003820.2 | ctttgcctggacagctcct | cagcagagaggggctcag | 3 |
| LAMP3 | NM_014398.3 | tgctcatttttatgggattgc | tgagtttatttgatgccttcatctt | 26 |
| FCGR2A∗ | NM_021642.3, NM_001136219.1 | cctgtgaccatcactgtcca | agccacaatgatccccatt | 44 |
| LSP1∗ |
NM_001242932.1 NM_002339.2 NM_001013253.1 NM_001013254.1 NM_001013255.1 |
tccctaggcgtcccatct | ggcaacaggaagcaacttct | 81 |
| CTLA4∗ | NM_005214.4 NM_001037631.2 | ttcatccctgtcttctgcaa | agtggctttgcctggagat | 40 |
| HSP90B1 | NM_003299.1 | tcctatttatgtatggagcagcaa | gcagcttcatcatcagattcttc | 69 |
| DOK3∗ |
NM_024872.2 NM_001144875.1 NM_001144876.1 |
tccccatggaggaaaactc | caccaccacgggaaactc | 63 |
| SNX20∗ | NM_001144972.1 NM_153337.2 | cacacccggactgatgtgt | tctctgttagtggtgcctgga | 76 |
| SLC26A3 | NM_000111.2 | ccatcatcgtgctgattgtc | agctgccaggacggactt | 2 |
| SLC39A4 | NM_017767.2 NM_130849.2 | gctccagtgtgtgggaca | gcctgttccgacagtcca | 46 |
| FOLR1∗ | NM_016729.2 NM_000802.3 NM_016725.2 NM_016724.2 | gaggacaagttgcatgagca | cctggctggtgttggtaga | 65 |
| SOD2∗ |
NM_001024465.1 NM_001024466.1 |
aatcaggatccactgcaagg | taagcgtgctcccacacat | 3 |
| TDO2 | NM_005651.2 | ggagaagaaaatgaactgctacttaaa | ggctctaaacctggagttctttc | 15 |
| ALDOB | NM_000035.3 | cggccaaaggacagtatgtt | aagagcgactgggtggaa | 45 |
| GAPDH | NM_002046.3 | agccacatcgctcagacac | gcccaatacgaccaaatcc | 60 |
Assays were designed to detect both transcript isoforms. UPL: Universal Probe Library.