Table 2. miRNAs more abundantly detected by the SOLiD platform.
| miRNA (hsa-miR) | Fold change | p-value | Reads/million | Reads/million | Cell line | Sequence |
|---|---|---|---|---|---|---|
| (SOLiD:PGM) | (SOLiD) | (PGM) | ||||
| 150-5pa | N.A. | 0.0084 | 26.02 | 0 | C5.2 | ucucccaacccuuguaccagug |
| 26.36x | 0.0028 | 23.99 | 0.91 | HB4a | ||
| 142-5pb | N.A. | 0.0302 | 12.57 | 0 | HB4a | cauaaaguagaaagcacuacu |
| 10.7x | 0.1141 | 12.01 | 1.12 | C5.2 | ||
| 223-3pb | N.A. | 0.0340 | 12.55 | 0 | C5.2 | Ugucaguuugucaaauacccca |
| N.A. | 0.1535 | 5.14 | 0 | HB4a | ||
| 3607-5p1 | 1731x | 0.0367 | 2094.4 | 1.21 | C5.2 | gcaugugaugaagcaaaucagu |
| 1968x | 0.0286 | 5353.8 | 2.73 | HB4a | ||
| 4284a | 118.8x | 0.0002 | 287.57 | 2.42 | C5.2 | gggcucacaucaccccau |
| 14.39x | 0.0042 | 471.19 | 32.75 | HB4a | ||
| 199a-3p/ 199b-3pa | 17.6x | 0.0429 | 21.23 | 1.21 | C5.2 | acaguagucugcacauugguua |
| 12.86x | 0.0274 | 35.12 | 2.73 | HB4a | ||
| 1249b | 16.13x | 0.0180 | 39.03 | 2.42 | C5.2 | acgcccuucccccccuucuuca |
| N.A. | 0.2007 | 43.98 | 0 | HB4a | ||
| 181b-3pb | 13.18x | 0.0424 | 23.99 | 1.82 | HB4a | cucacugaacaaugaaugcaa |
| 1.69x | 0.7040 | 2.05 | 1.21 | C5.2 | ||
| 29a-3p/ 29c-3pa | 4.19x | 0.0266 | 11927 | 2849 | C5.2 | uagcaccaucugaaaucgguua |
| 10.48x | 0.0062 | 37988 | 3622 | HB4a | uagcaccauuugaaaucgguua | |
| 103a-3pa | 8.41x | 0.0060 | 128212 | 15233 | C5.2 | agcagcauuguacagggcuauga |
| 4.03x | 0.0406 | 70822 | 17552 | HB4a | ||
| 152-5pb | 8.07x | 0.0202 | 102.8 | 12.74 | HB4a | agguucugugauacacuccgacu |
| 7.78x | 0.0517 | 28.30 | 3.64 | C5.2 | ||
| 4521b | 5.61x | 0.0200 | 217.73 | 38.79 | C5.2 | gcuaaggaaguccugugcucag |
| 2.99 | 0.0842 | 261.30 | 87.34 | HB4a | ||
| 301bb | 4.39x | 0.0270 | 532.68 | 121.23 | C5.2 | cagugcaaugauauugucaaagc |
| 2.06x | 0.1569 | 589.98 | 286.58 | HB4a | ||
| 107b | 3.82x | 0.0324 | 3831.24 | 1000.16 | C5.2 | agcagcauuguacagggcuauca |
| 2.55x | 0.0999 | 3918.28 | 1535.69 | HB4a |
a miRNAs preferentially represented by the SOLiD platform for both cell lines; b significant differential representation seen for only one of the cell lines. For each miRNA row, the top line contains the lower p-value for differential representation between SOLiD and PGM.